Last updated on 2022-05-15 01:52:29 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 2.6.3 | 25.75 | 372.48 | 398.23 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 2.6.3 | 21.82 | 262.26 | 284.08 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 2.6.3 | 471.96 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 2.6.3 | 420.34 | NOTE | |||
| r-devel-windows-x86_64 | 2.6.3 | 46.00 | 723.00 | 769.00 | NOTE | |
| r-patched-linux-x86_64 | 2.6.3 | 25.75 | 339.75 | 365.50 | NOTE | |
| r-release-linux-x86_64 | 2.6.3 | 30.04 | 341.69 | 371.73 | NOTE | |
| r-release-macos-arm64 | 2.6.3 | 233.00 | NOTE | |||
| r-release-macos-x86_64 | 2.6.3 | 317.00 | NOTE | |||
| r-release-windows-x86_64 | 2.6.3 | 50.00 | 501.00 | 551.00 | NOTE | |
| r-oldrel-macos-arm64 | 2.6.3 | 242.00 | NOTE | |||
| r-oldrel-macos-x86_64 | 2.6.3 | 306.00 | NOTE | |||
| r-oldrel-windows-ix86+x86_64 | 2.6.3 | 48.00 | 429.00 | 477.00 | WARN |
Version: 2.6.3
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: 'webshot2'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64
Version: 2.6.3
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
--- re-building 'RRphylo.Rmd' using rmarkdown
Loading required package: ape
Loading required package: kableExtra
Loading required package: phytools
Loading required package: maps
Attaching package: 'phytools'
The following object is masked from 'package:RRphylo':
node.paths
--- finished re-building 'RRphylo.Rmd'
--- re-building 'Tree-Manipulation.Rmd' using rmarkdown
Loading required package: ape
Loading required package: phytools
Loading required package: maps
Attaching package: 'phytools'
The following object is masked from 'package:RRphylo':
node.paths
Loading required package: kableExtra
--- finished re-building 'Tree-Manipulation.Rmd'
--- re-building 'overfitRR.Rmd' using rmarkdown
Loading required package: RRphylo
Loading required package: emmeans
--- finished re-building 'overfitRR.Rmd'
--- re-building 'search.conv.Rmd' using rmarkdown
Loading required package: kableExtra
Loading required package: vegan
Loading required package: permute
Loading required package: lattice
This is vegan 2.6-2
Attaching package: 'vegan'
The following object is masked from 'package:phytools':
scores
Loading required package: cluster
Attaching package: 'cluster'
The following object is masked from 'package:maps':
votes.repub
Loading required package: plotrix
Attaching package: 'plotrix'
The following object is masked from 'package:rgl':
mtext3d
Loading required package: geomorph
Loading required package: RRPP
Loading required package: Matrix
Loading required package: pdftools
Using poppler version 22.04.0
--- finished re-building 'search.conv.Rmd'
--- re-building 'search.shift.Rmd' using rmarkdown
Loading required package: ape
Loading required package: phytools
Loading required package: maps
Attaching package: 'phytools'
The following object is masked from 'package:RRphylo':
node.paths
Loading required package: scales
Loading required package: kableExtra
Loading required package: plotrix
Attaching package: 'plotrix'
The following object is masked from 'package:scales':
rescale
Loading required package: RColorBrewer
--- finished re-building 'search.shift.Rmd'
--- re-building 'search.trend.Rmd' using rmarkdown
Loading required package: ape
Loading required package: phytools
Loading required package: maps
Attaching package: 'phytools'
The following object is masked from 'package:RRphylo':
node.paths
Loading required package: ddpcr
Attaching package: 'ddpcr'
The following object is masked from 'package:stats':
step
Quitting from lines 43-166 (search.trend.Rmd)
Error: processing vignette 'search.trend.Rmd' failed with diagnostics:
worker initialization failed: there is no package called 'geiger'
--- failed re-building 'search.trend.Rmd'
--- re-building 'swapONE.Rmd' using rmarkdown
Loading required package: ape
Loading required package: phytools
Loading required package: maps
Attaching package: 'phytools'
The following object is masked from 'package:RRphylo':
node.paths
--- finished re-building 'swapONE.Rmd'
SUMMARY: processing the following file failed:
'search.trend.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavor: r-oldrel-windows-ix86+x86_64