A fast implementation of k-mer (subsequences of length k) counting with the support for all types of biological sequences and k-mer variants.
Version: |
1.0.1 |
Depends: |
R (≥ 3.6) |
Imports: |
Matrix, Rcpp (≥ 1.0.4), RcppParallel (≥ 5.1.2), rlang, slam |
LinkingTo: |
Rcpp, RcppParallel |
Suggests: |
covr, ggplot2, knitr, microbenchmark, pryr, rmarkdown, spelling, testthat |
Published: |
2021-10-05 |
Author: |
Jadwiga Słowik
[aut, cre],
Michał Burdukiewicz
[ths] |
Maintainer: |
Jadwiga Słowik <jadwiga.slowik5 at gmail.com> |
BugReports: |
https://github.com/slowikj/seqR/issues |
License: |
GPL (≥ 3) |
URL: |
https://github.com/slowikj/seqR |
NeedsCompilation: |
yes |
SystemRequirements: |
c++17, GNU make |
Language: |
en-US |
Citation: |
seqR citation info |
Materials: |
README |
CRAN checks: |
seqR results |