A fast implementation of k-mer (subsequences of length k) counting with the support for all types of biological sequences and k-mer variants.
| Version: |
1.0.1 |
| Depends: |
R (≥ 3.6) |
| Imports: |
Matrix, Rcpp (≥ 1.0.4), RcppParallel (≥ 5.1.2), rlang, slam |
| LinkingTo: |
Rcpp, RcppParallel |
| Suggests: |
covr, ggplot2, knitr, microbenchmark, pryr, rmarkdown, spelling, testthat |
| Published: |
2021-10-05 |
| Author: |
Jadwiga Słowik 
[aut, cre],
Michał Burdukiewicz
[ths] |
| Maintainer: |
Jadwiga Słowik <jadwiga.slowik5 at gmail.com> |
| BugReports: |
https://github.com/slowikj/seqR/issues |
| License: |
GPL (≥ 3) |
| URL: |
https://github.com/slowikj/seqR |
| NeedsCompilation: |
yes |
| SystemRequirements: |
c++17, GNU make |
| Language: |
en-US |
| Citation: |
seqR citation info |
| Materials: |
README |
| CRAN checks: |
seqR results |