seqR: Fast and Comprehensive K-Mer Counting Package

A fast implementation of k-mer (subsequences of length k) counting with the support for all types of biological sequences and k-mer variants.

Version: 1.0.1
Depends: R (≥ 3.6)
Imports: Matrix, Rcpp (≥ 1.0.4), RcppParallel (≥ 5.1.2), rlang, slam
LinkingTo: Rcpp, RcppParallel
Suggests: covr, ggplot2, knitr, microbenchmark, pryr, rmarkdown, spelling, testthat
Published: 2021-10-05
Author: Jadwiga Słowik ORCID iD [aut, cre], Michał Burdukiewicz ORCID iD [ths]
Maintainer: Jadwiga Słowik <jadwiga.slowik5 at>
License: GPL (≥ 3)
NeedsCompilation: yes
SystemRequirements: c++17, GNU make
Language: en-US
Citation: seqR citation info
Materials: README
CRAN checks: seqR results


Reference manual: seqR.pdf
Vignettes: Overview of seqR features


Package source: seqR_1.0.1.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
macOS binaries: r-release (arm64): seqR_1.0.1.tgz, r-release (x86_64): seqR_1.0.1.tgz, r-oldrel: seqR_1.0.1.tgz
Old sources: seqR archive


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