Provides functions to estimate mixed probit models using, for instance, pedigree data like in <doi:10.1002/sim.1603>. The models are also commonly called liability threshold models. The approximation is based on direct log marginal likelihood approximations like the randomized Quasi-Monte Carlo suggested by <doi:10.1198/106186002394> with a similar procedure to approximate the derivatives. Graph-based methods are also provided that can be used to simplify pedigrees.
| Version: | 0.1.0 |
| Depends: | R (≥ 3.5.0) |
| Imports: | Rcpp |
| LinkingTo: | Rcpp, RcppArmadillo, BH, testthat |
| Suggests: | testthat, mvtnorm, xml2, knitr, rmarkdown, R.rsp, abind, kinship2, igraph |
| Published: | 2021-10-29 |
| Author: | Benjamin Christoffersen [cre, aut], Alan Genz [cph], Frank Bretz [cph], Bjoern Bornkamp [cph], Torsten Hothorn [cph], Christophe Dutang [cph], Diethelm Wuertz [cph], R-core [cph] |
| Maintainer: | Benjamin Christoffersen <boennecd at gmail.com> |
| License: | GPL-2 |
| NeedsCompilation: | yes |
| SystemRequirements: | C++14 |
| CRAN checks: | pedmod results |
| Reference manual: | pedmod.pdf |
| Vignettes: |
partitioning families pedmod |
| Package source: | pedmod_0.1.0.tar.gz |
| Windows binaries: | r-devel: pedmod_0.1.0.zip, r-release: pedmod_0.1.0.zip, r-oldrel: pedmod_0.1.0.zip |
| macOS binaries: | r-release (arm64): pedmod_0.1.0.tgz, r-release (x86_64): pedmod_0.1.0.tgz, r-oldrel: pedmod_0.1.0.tgz |
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