parseRPDR: Parse and Manipulate Research Patient Data Registry ('RPDR') Text Queries

Functions to load Research Patient Data Registry ('RPDR') text queries from Partners Healthcare institutions into R. The package also provides helper functions to manipulate data and execute common procedures such as finding the closest radiological exams considering a given timepoint, or creating a DICOM header database from the downloaded images. 'parseRPDR' currently supports txt sources: "mrn", "con", "dem", "enc", "rdt", "lab", "med", "dia", "rfv", "prc", "phy", "lno", "car", "dis", "end", "hnp", "opn", "pat", "prg", "pul", "rad" and "vis". All functionalities are parallelized for fast and efficient analyses.

Version: 0.2.1
Depends: R (≥ 4.0)
Imports: data.table (≥ 1.13.2), stringr (≥ 1.4.0), readr (≥ 1.4.0), doParallel (≥ 1.0.16), foreach (≥ 1.5.1), bigmemory (≥ 4.5.36), reticulate (≥ 1.20)
Suggests: testthat (≥ 3.0.0), knitr, rmarkdown
Published: 2021-09-10
Author: Marton Kolossvary [aut, cre]
Maintainer: Marton Kolossvary <mkolossvary at>
License: AGPL (≥ 3)
NeedsCompilation: no
Materials: README NEWS
CRAN checks: parseRPDR results


Reference manual: parseRPDR.pdf


Package source: parseRPDR_0.2.1.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
macOS binaries: r-release (arm64): parseRPDR_0.2.1.tgz, r-release (x86_64): parseRPDR_0.2.1.tgz, r-oldrel: parseRPDR_0.2.1.tgz
Old sources: parseRPDR archive


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