nLTT: Calculate the NLTT Statistic

Provides functions to calculate the normalised Lineage-Through- Time (nLTT) statistic, given two phylogenetic trees. The nLTT statistic measures the difference between two Lineage-Through-Time curves, where each curve is normalised both in time and in number of lineages.

Version: 1.4.6
Imports: ape, coda, testit
Suggests: DDD, ggplot2, Hmisc, knitr, lintr, microbenchmark, plyr, reshape2, rmarkdown, TESS, testthat (≥ 2.1.0), TreeSim, DAISIE
Published: 2022-02-18
Author: Thijs Janzen [aut, cre], Richèl J.C. Bilderbeek ORCID iD [aut], Pedro Neves [ctb]
Maintainer: Thijs Janzen <thijsjanzen at gmail.com>
BugReports: https://github.com/thijsjanzen/nLTT/issues
License: GPL-2
URL: https://github.com/thijsjanzen/nLTT
NeedsCompilation: no
CRAN checks: nLTT results

Documentation:

Reference manual: nLTT.pdf
Vignettes: How to visualize nLTT values distributions
nltt_diff functions
How to plot multiple nLTTs and their average
How to stretch an nLTT timepoints matrix
Trees with a root edge
Walkthrough

Downloads:

Package source: nLTT_1.4.6.tar.gz
Windows binaries: r-devel: nLTT_1.4.6.zip, r-release: nLTT_1.4.6.zip, r-oldrel: nLTT_1.4.6.zip
macOS binaries: r-release (arm64): nLTT_1.4.6.tgz, r-release (x86_64): nLTT_1.4.6.tgz, r-oldrel: nLTT_1.4.6.tgz
Old sources: nLTT archive

Reverse dependencies:

Reverse imports: nodeSub
Reverse suggests: babette

Linking:

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