microeco: Microbial Community Ecology Data Analysis

A series of statistical and plotting approaches in microbial community ecology based on the R6 class. The classes are designed for data preprocessing, taxa abundance plotting, alpha diversity statistics, beta diversity statistics, differential abundance test, environmental data analysis, null model analysis, network analysis, machine learning and functional analysis.

Version: 0.7.1
Depends: R (≥ 3.5.0)
Imports: R6, stats, ape, vegan, rlang, data.table, magrittr, dplyr, tibble, scales, grid, ggplot2, RColorBrewer, reshape2
Suggests: GUniFrac, MASS, ggpubr, randomForest, ggdendro, ggrepel, agricolae, gridExtra, picante, pheatmap, igraph, rgexf, mice
Published: 2022-03-19
Author: Chi Liu [aut, cre], Felipe R. P. Mansoldo [ctb], Umer Zeeshan Ijaz [ctb], Chenhao Li [ctb], Yang Cao [ctb], Minjie Yao [ctb], Xiangzhen Li [ctb]
Maintainer: Chi Liu <liuchi0426 at 126.com>
License: GPL-3
URL: https://github.com/ChiLiubio/microeco
NeedsCompilation: no
Citation: microeco citation info
CRAN checks: microeco results


Reference manual: microeco.pdf


Package source: microeco_0.7.1.tar.gz
Windows binaries: r-devel: microeco_0.7.1.zip, r-release: microeco_0.7.1.zip, r-oldrel: microeco_0.7.1.zip
macOS binaries: r-release (arm64): microeco_0.7.1.tgz, r-release (x86_64): microeco_0.7.1.tgz, r-oldrel: microeco_0.7.1.tgz
Old sources: microeco archive

Reverse dependencies:

Reverse imports: file2meco


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