microPop: Process-Based Modelling of Microbial Populations

Modelling interacting microbial populations - example applications include human gut microbiota, rumen microbiota and phytoplankton. Solves a system of ordinary differential equations to simulate microbial growth and resource uptake over time. This version contains network visualisation functions.

Version: 1.6
Depends: deSolve, visNetwork
Imports: testthat, methods
Suggests: rmarkdown, R.rsp, knitr, webshot
Published: 2022-02-03
Author: Helen Kettle [aut, cre]
Maintainer: Helen Kettle <Helen.Kettle at bioss.ac.uk>
License: GPL-3 | file LICENSE
URL: https://besjournals.onlinelibrary.wiley.com/doi/full/10.1111/2041-210X.12873
NeedsCompilation: no
CRAN checks: microPop results

Documentation:

Reference manual: microPop.pdf
Vignettes: microPop Tutorial
Networks

Downloads:

Package source: microPop_1.6.tar.gz
Windows binaries: r-devel: microPop_1.6.zip, r-release: microPop_1.6.zip, r-oldrel: microPop_1.6.zip
macOS binaries: r-release (arm64): microPop_1.6.tgz, r-release (x86_64): microPop_1.6.tgz, r-oldrel: microPop_1.6.tgz
Old sources: microPop archive

Linking:

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