genekitr: Gene Analysis Toolkit in R
An analysis toolkit based on the gene. It mainly includes five
features (search, transform, analysis, visualization, and export).
The user just needs to provide gene id ('entrez', 'symbol' or 'ensembl')
then can search gene-related information, transform id type, do enrichment
analysis, visualize enrichment result, visualize multi-group overlap,
and export result as excel sheets to easily share and communicate with others.
| Version: |
0.5.3 |
| Depends: |
R (≥ 3.5) |
| Imports: |
clusterProfiler, dplyr, ggplot2, stringr, stringi, tidyr, tibble, VennDiagram, rlang |
| Suggests: |
BiocManager, cowplot, DOSE, data.table, easyPubMed, fgsea, futile.logger, ggplotify, ggsci, ggupset, ggrepel, magrittr, msigdbr, openxlsx, RColorBrewer, rappdirs, rentrez, scales, stats, utils, testthat (≥ 3.0.0), knitr, rmarkdown |
| Published: |
2022-01-08 |
| Author: |
Yunze Liu [aut, cre] |
| Maintainer: |
Yunze Liu <jieandze1314 at gmail.com> |
| BugReports: |
https://github.com/GangLiLab/genekitr/issues |
| License: |
GPL-3 |
| URL: |
https://github.com/GangLiLab/genekitr |
| NeedsCompilation: |
no |
| Materials: |
README |
| CRAN checks: |
genekitr results |
Documentation:
Downloads:
Linking:
Please use the canonical form
https://CRAN.R-project.org/package=genekitr
to link to this page.