agvgd: An R Implementation of the 'Align-GVGD' Method

'Align-GVGD' ('A-GVGD') is a method to predict the impact of 'missense' substitutions based on the properties of amino acid side chains and protein multiple sequence alignments <doi:10.1136/jmg.2005.033878>. 'A-GVGD' is an extension of the original 'Grantham' distance to multiple sequence alignments. This package provides an alternative R implementation to the web version found on <http://agvgd.hci.utah.edu/>.

Version: 0.1.1
Depends: R (≥ 2.10)
Imports: crayon, dplyr, grantham, magrittr, purrr, rlang, seqinr, stringr, tibble, tidyr, vctrs
Suggests: covr, testthat (≥ 3.0.0)
Published: 2022-02-03
Author: Ramiro Magno ORCID iD [aut, cre], Isabel Duarte ORCID iD [aut], Ana-Teresa Maia ORCID iD [aut], CINTESIS [cph, fnd]
Maintainer: Ramiro Magno <ramiro.magno at gmail.com>
BugReports: https://github.com/maialab/agvgd/issues
License: MIT + file LICENSE
URL: https://maialab.org/agvgd/, https://github.com/maialab/agvgd
NeedsCompilation: no
Materials: README NEWS
CRAN checks: agvgd results

Documentation:

Reference manual: agvgd.pdf

Downloads:

Package source: agvgd_0.1.1.tar.gz
Windows binaries: r-devel: agvgd_0.1.1.zip, r-release: agvgd_0.1.1.zip, r-oldrel: agvgd_0.1.1.zip
macOS binaries: r-release (arm64): agvgd_0.1.1.tgz, r-release (x86_64): agvgd_0.1.1.tgz, r-oldrel: agvgd_0.1.1.tgz
Old sources: agvgd archive

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