Mutation Annotation Format (MAF) is a tabular data format used for storing genetic mutation data.
For example, The Cancer Genome Atlas (TCGA) project has made MAF files from each project publicly available.
This package contains a set of tools to easily create an HTML dashboard to summarize and visualize data from MAF file.
The resulting HTML file serves as a self-contained report that can be used to explore the result.
| Version: |
0.2.1 |
| Depends: |
R (≥ 4.0.0), rmarkdown (≥ 2.5.0), knitr (≥ 1.3), ggplot2 (≥ 2.3.3), TCGAbiolinks (≥ 2.14.1), maftools (≥ 2.0.0) |
| Imports: |
DT (≥ 0.16.0), htmltools (≥ 0.5.0), flexdashboard (≥
0.5.2), bsplus (≥ 0.1.2), crosstalk (≥ 1.1.0), plotly (≥
4.9.2), canvasXpress (≥ 1.29.0), dplyr (≥ 1.0.2), ComplexHeatmap (≥ 2.2.0), circlize (≥ 0.4.11), ggbeeswarm (≥
0.6.0), ensurer (≥ 1.1.0), data.table (≥ 1.13.2), reshape2 (≥ 1.4.4), GenomicRanges (≥ 1.38.0), IRanges (≥ 2.20.0), pheatmap (≥ 1.0.0), tibble (≥ 3.1.3), readr (≥ 2.0.0), tidyr (≥ 1.1.3) |
| Suggests: |
jsonlite |
| Published: |
2022-04-01 |
| Author: |
Ashish Jain [aut, cre],
Mayank Tandon [aut],
Frederick National Laboratory For Cancer Research [cph] |
| Maintainer: |
Ashish Jain <jain.ashishjain1 at gmail.com> |
| BugReports: |
https://github.com/ashishjain1988/MAFDash/issues |
| License: |
GPL-2 | GPL-3 [expanded from: GPL] |
| URL: |
https://github.com/ashishjain1988/MAFDash/ |
| NeedsCompilation: |
no |
| Materials: |
README |
| CRAN checks: |
MAFDash results |