Canek: Batch Correction of Single Cell Transcriptome Data

Non-linear/linear hybrid method for batch-effect correction that uses Mutual Nearest Neighbors (MNNs) to identify similar cells between datasets.

Version: 0.2.0
Depends: R (≥ 2.10)
Imports: FNN, irlba, numbers, fpc, bluster, igraph, matrixStats
Suggests: testthat (≥ 2.1.0), Seurat, SingleCellExperiment, SummarizedExperiment, knitr, rmarkdown
Published: 2022-03-23
Author: Martin Loza ORCID iD [aut, cre], Diego Diez ORCID iD [aut]
Maintainer: Martin Loza <martin.loza.lopez at gmail.com>
License: MIT + file LICENSE
NeedsCompilation: no
Citation: Canek citation info
Materials: README NEWS
CRAN checks: Canek results

Documentation:

Reference manual: Canek.pdf
Vignettes: Run Canek on a toy example

Downloads:

Package source: Canek_0.2.0.tar.gz
Windows binaries: r-devel: Canek_0.2.0.zip, r-release: Canek_0.2.0.zip, r-oldrel: not available
macOS binaries: r-release (arm64): Canek_0.2.0.tgz, r-release (x86_64): Canek_0.2.0.tgz, r-oldrel: not available

Linking:

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