BlockFeST: Bayesian Calculation of Region-Specific Fixation Index to Detect Local Adaptation

An R implementation of an extension of the 'BayeScan' software (Foll, 2008) <doi:10.1534/genetics.108.092221> for codominant markers, adding the option to group individual SNPs into pre-defined blocks. A typical application of this new approach is the identification of genomic regions, genes, or gene sets containing one or more SNPs that evolved under directional selection.

Version:	2.0
Depends:	R (≥ 2.14.2), BASIX
Imports:	methods
Suggests:	PopGenome
Published:	2021-03-15
Author:	Bastian Pfeifer
Maintainer:	Bastian Pfeifer <bastianxpfeifer at gmail.com>
License:	GPL-2
NeedsCompilation:	yes
Citation:	BlockFeST citation info
Materials:	README NEWS
CRAN checks:	BlockFeST results

Documentation:

Reference manual:	BlockFeST.pdf
Vignettes:	Input format

Downloads:

Package source:	BlockFeST_2.0.tar.gz
Windows binaries:	r-devel: BlockFeST_2.0.zip, r-release: BlockFeST_2.0.zip, r-oldrel: BlockFeST_2.0.zip
macOS binaries:	r-release (arm64): BlockFeST_2.0.tgz, r-release (x86_64): BlockFeST_2.0.tgz, r-oldrel: BlockFeST_2.0.tgz
Old sources:	BlockFeST archive

Reverse dependencies:

Reverse suggests:

PopGenome

Linking:

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