BASiNETEntropy: Classification of RNA Sequences using Complex Network and Information Theory

It makes the creation of networks from sequences of RNA, with this is done the abstraction of characteristics of these networks with a methodology of maximum entropy for the purpose of making a classification between the classes of the sequences. There are two data present in the 'BASiNET' package, "mRNA", and "ncRNA" with 100 sequences. These sequences were taken from the data set used in the article (LI, Aimin; ZHANG, Junying; ZHOU, Zhongyin, 2014) <doi:10.1186/1471-2105-15-311>, these sequences are used to run examples.

Version: 0.99.2
Depends: R (≥ 4.1.0)
Imports: igraph, Biostrings, randomForest
Suggests: knitr, rmarkdown
Published: 2022-03-23
Author: Murilo Montanini Breve ORCID iD [aut], Matheus Henrique Pimenta-Zanon ORCID iD [aut], Fabricio Martins Lopes ORCID iD [aut, cre]
Maintainer: Fabricio Martins Lopes <fabricio at utfpr.edu.br>
License: GPL-3
NeedsCompilation: no
Materials: README
CRAN checks: BASiNETEntropy results

Documentation:

Reference manual: BASiNETEntropy.pdf
Vignettes: Classification of RNA sequences

Downloads:

Package source: BASiNETEntropy_0.99.2.tar.gz
Windows binaries: r-devel: BASiNETEntropy_0.99.2.zip, r-release: BASiNETEntropy_0.99.2.zip, r-oldrel: BASiNETEntropy_0.99.1.zip
macOS binaries: r-release (arm64): BASiNETEntropy_0.99.2.tgz, r-release (x86_64): BASiNETEntropy_0.99.2.tgz, r-oldrel: BASiNETEntropy_0.99.1.tgz
Old sources: BASiNETEntropy archive

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