Last updated on 2022-04-08 01:48:58 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.1.0 | 34.36 | 362.23 | 396.59 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.1.0 | 30.72 | 300.55 | 331.27 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.1.0 | 465.19 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 0.1.0 | 435.12 | NOTE | |||
| r-devel-windows-x86_64-new-UL | 0.1.0 | 67.00 | 297.00 | 364.00 | OK | |
| r-patched-linux-x86_64 | 0.1.0 | 27.66 | 337.26 | 364.92 | OK | |
| r-release-linux-x86_64 | 0.1.0 | 22.22 | 327.99 | 350.21 | OK | |
| r-release-macos-arm64 | 0.1.0 | NOTE | ||||
| r-release-macos-x86_64 | 0.1.0 | NOTE | ||||
| r-release-windows-ix86+x86_64 | 0.1.0 | 68.00 | 304.00 | 372.00 | OK | |
| r-oldrel-macos-x86_64 | 0.1.0 | NOTE | ||||
| r-oldrel-windows-ix86+x86_64 | 0.1.0 | 69.00 | 231.00 | 300.00 | ERROR |
Version: 0.1.0
Check: dependencies in R code
Result: NOTE
Namespaces in Imports field not imported from:
‘future’ ‘utils’
All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-x86_64
Version: 0.1.0
Check: package dependencies
Result: NOTE
Packages suggested but not available for checking:
'ontoProc', 'SingleCellSignalR'
Flavor: r-release-macos-x86_64
Version: 0.1.0
Check: package dependencies
Result: NOTE
Packages suggested but not available for checking:
'KEGGREST', 'ontoProc', 'SingleCellSignalR'
Flavor: r-oldrel-macos-x86_64
Version: 0.1.0
Check: data for non-ASCII characters
Result: WARN
Error loading dataset 'seurat_sample_tms_liver':
Error in .requirePackage(package) :
unable to find required package 'SeuratObject'
The dataset(s) may use package(s) not declared in Depends/Imports.
Flavor: r-oldrel-windows-ix86+x86_64
Version: 0.1.0
Check: tests
Result: ERROR
Running 'spelling.R' [0s]
Running 'testthat.R' [10s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(scDiffCom)
>
> test_check("scDiffCom")
Loading required package: SeuratObject
Error: package or namespace load failed for 'SeuratObject' in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]):
namespace 'Matrix' 1.3-2 is already loaded, but >= 1.3.3 is required
[ FAIL 2 | WARN 0 | SKIP 0 | PASS 5 ]
== Failed tests ================================================================
-- Error (test-everything.R:165:5): sample object is of class Seurat -----------
Error in `.requirePackage(package)`: unable to find required package 'SeuratObject'
Backtrace:
x
1. \-testthat::expect_s4_class(seurat_test, "Seurat") at test-everything.R:165:4
2. +-testthat:::format_class(methods::is(object))
3. | +-base::paste0(encodeString(x, quote = "'"), collapse = "/")
4. | \-base::encodeString(x, quote = "'")
5. \-methods::is(object)
6. \-methods::extends(class1)
7. \-methods::getClassDef(class1)
8. \-methods:::.requirePackage(package)
-- Error (test-everything.R:171:1): (code run outside of `test_that()`) --------
Error in `loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])`: namespace 'Matrix' 1.3-2 is already loaded, but >= 1.3.3 is required
Backtrace:
x
1. \-base::lapply(...) at test-everything.R:171:0
2. \-scDiffCom FUN(X[[i]], ...)
3. \-scDiffCom:::extract_analysis_inputs(...) at test-everything.R:174:4
4. \-scDiffCom:::extract_seurat_inputs(...)
5. \-Seurat::GetAssayData
6. \-base::getExportedValue(pkg, name)
7. \-base::asNamespace(ns)
8. \-base::getNamespace(ns)
9. \-base::loadNamespace(name)
10. +-base::namespaceImportFrom(...)
11. | \-base::asNamespace(ns)
12. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
13. +-base::namespaceImportFrom(...)
14. | \-base::asNamespace(ns)
15. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
[ FAIL 2 | WARN 0 | SKIP 0 | PASS 5 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-windows-ix86+x86_64