sybilcycleFreeFlux: Cycle-Free Flux Balance Analysis (CycleFreeFlux)

Implement cycle-Free flux balance analysis (CycleFreeFlux), cycle-free flux variability, and Random Sampling of solution space. Desouki, A. A., Jarre, F., Gelius-Dietrich, G., & Lercher, M. J. (2015). CycleFreeFlux: efficient removal of thermodynamically infeasible loops from flux distributions. Bioinformatics, 31(13), 2159-2165. <doi:10.1093/bioinformatics/btv096>. Flux balance analysis is a technique to find fluxes in metabolic models at steady state. It is described in Orth, J.D., Thiele, I. and Palsson, B.O. What is flux balance analysis? Nat. Biotech. 28, 245-248 (2010).

Version: 2.0.2
Depends: R (≥ 3.0.3), sybil, Matrix, MASS
Imports: methods
Suggests: cplexAPI (≥ 1.2.6), glpkAPI (≥ 1.2.1)
Published: 2021-01-13
Author: Abdelmoneim Amer Desouki [aut, cre]
Maintainer: Abdelmoneim Amer Desouki <abdelmoneim.amer at>
License: GPL-3
NeedsCompilation: no
Materials: NEWS
CRAN checks: sybilcycleFreeFlux results


Reference manual: sybilcycleFreeFlux.pdf


Package source: sybilcycleFreeFlux_2.0.2.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
macOS binaries: r-release (arm64): sybilcycleFreeFlux_2.0.2.tgz, r-release (x86_64): sybilcycleFreeFlux_2.0.2.tgz, r-oldrel: sybilcycleFreeFlux_2.0.2.tgz
Old sources: sybilcycleFreeFlux archive


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