polyqtlR: QTL Analysis in Autopolyploid Bi-Parental F1 Populations
Quantitative trait loci (QTL) analysis and exploration of meiotic patterns in
autopolyploid bi-parental F1 populations.
For all ploidy levels, identity-by-descent (IBD) probabilities can be estimated.
Significance thresholds, exploring QTL allele effects and visualising results are provided.
For background, see the 2018 dissertation of P.M. Bourke <doi:10.18174/444415>.
Version: |
0.0.6 |
Depends: |
R (≥ 3.5.0) |
Imports: |
abind, doParallel, foreach, Hmisc, knitr, nlme, RColorBrewer, Rcpp (≥ 0.12.19), reshape2 |
LinkingTo: |
Rcpp, RcppArmadillo |
Suggests: |
igraph, mappoly, polymapR, rmarkdown |
Published: |
2021-06-23 |
Author: |
Peter Bourke [aut, cre],
Christine Hackett [ctb],
Chris Maliepaard [ctb],
Geert van Geest [ctb],
Roeland Voorrips [ctb],
Johan Willemsen [ctb] |
Maintainer: |
Peter Bourke <pbourkey at gmail.com> |
License: |
GPL-3 |
NeedsCompilation: |
yes |
SystemRequirements: |
C++11 |
CRAN checks: |
polyqtlR results |
Documentation:
Downloads:
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