pastis: Phylogenetic Assembly with Soft Taxonomic Inferences

A pre-processor for mrBayes that assimilates sequences, taxonomic information and tree constraints as per xxx. The main functions of interest for most users will be pastis_simple, pastis_main and conch. The main analysis is conducted with pastis_simple or pastis_main followed by a manual execution of mrBayes (>3.2). The placement of taxa not contained in the tree constraint can be investigated using conch.

Version:	0.1-2
Depends:	R (≥ 2.10), caper (≥ 0.5.0), ape (≥ 3.0.0)
Published:	2013-09-11
Author:	Gavin Thomas [aut, cre]
Maintainer:	Gavin Thomas <gavin.thomas at sheffield.ac.uk>
License:	GPL (≥ 3)
URL:	http://cran.r-project.org/web/packages/pastis/
NeedsCompilation:	no
In views:	Phylogenetics
CRAN checks:	pastis results

Documentation:

Reference manual:	pastis.pdf
Vignettes:	Using PASTIS

Downloads:

Package source:	pastis_0.1-2.tar.gz
Windows binaries:	r-devel: pastis_0.1-2.zip, r-release: pastis_0.1-2.zip, r-oldrel: pastis_0.1-2.zip
macOS binaries:	r-release (arm64): pastis_0.1-2.tgz, r-release (x86_64): pastis_0.1-2.tgz, r-oldrel: pastis_0.1-2.tgz
Old sources:	pastis archive

Linking:

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