Differential analyses and Enrichment pipeline for bulk 'ATAC-seq' data
analyses. This package combines different packages to have an ultimate package
for both data analyses and visualization of 'ATAC-seq' data. Methods are described in
Karakaslar et al. (2021) <doi:10.1101/2021.03.05.434143>.
| Version: |
0.2.1 |
| Depends: |
R (≥ 3.5.0) |
| Imports: |
ChIPseeker, DESeq2, dplyr, edgeR, fgsea, GenomicRanges, ggplot2, ggrepel, grDevices, limma, utils, pheatmap, preprocessCore, RColorBrewer, sva, TxDb.Hsapiens.UCSC.hg38.knownGene, TxDb.Hsapiens.UCSC.hg19.knownGene, TxDb.Mmusculus.UCSC.mm10.knownGene, writexl |
| Suggests: |
biomaRt, knitr, rmarkdown |
| Published: |
2021-04-02 |
| Author: |
Onur Karakaslar [aut, cre],
Duygu Ucar  [aut] |
| Maintainer: |
Onur Karakaslar <eonurkara at gmail.com> |
| BugReports: |
https://github.com/eonurk/cinaR/issues/ |
| License: |
GPL-3 |
| URL: |
https://github.com/eonurk/cinaR/ |
| NeedsCompilation: |
no |
| Materials: |
README NEWS |
| CRAN checks: |
cinaR results |