RClone: Partially Clonal Populations Analysis
R version of 'GenClone' (a computer program to analyse genotypic data, test for clonality and describe spatial clonal organization, Arnaud-Haond & Belkhir 2007, <https://wwz.ifremer.fr/clonix/content/download/68205/903914/file/GenClone2.0.setup.zip>), this package allows clone handling as 'GenClone' does, plus the possibility to work with several populations, MultiLocus Lineages (MLL) custom definition and use, and p-value calculation for psex statistic (probability of originating from distinct sexual events) and psex_Fis statistic (taking account of Hardy-Weinberg equilibrium departure) as 'MLGsim'/'MLGsim2' (a program for detecting clones using a simulation approach, Stenberg et al. 2003).
| Version: |
1.0.3 |
| Depends: |
R (≥ 3.2.0), graphics, stats, grDevices, utils, datasets, methods |
| Suggests: |
knitr, rmarkdown, pander, testthat |
| Published: |
2021-05-15 |
| Author: |
Sophie Arnaud-Haond [aut],
Diane Bailleul [aut, cre],
Solenn Stoeckel [ctb] |
| Maintainer: |
Diane Bailleul <diane.bailleul.pro at gmail.com> |
| License: |
GPL-2 | GPL-3 [expanded from: GPL (≥ 2.0)] |
| URL: |
https://github.com/dbailleul/RClone |
| NeedsCompilation: |
no |
| Materials: |
README |
| CRAN checks: |
RClone results |
Documentation:
Downloads:
Reverse dependencies:
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