2017.08.15
remove binSum.
add cDPA_interface.
2017.06.20
depend on penaltyLearning, delete related code in this pkg.
2016.08.06
Suggest ggplot2 >= 2.0, new geom_tallrect implementation.
cDPA C code now computes total Poisson loss which is consistent with
the PoissonLoss R function, and with other packages (Segmentor3IsBack,
coseg). It has been significantly cleaned up (duplication removed).
2015.04.07
move joint segmentation code to PeakSegJoint package.
2015.04.02
multiSampleSegZoom C function.
R implementation of multiSampleSegSome.
2015.03.27
Scripts up to Step4 under exec/
2015.03.23
Error checking in binSum.
chrom and sample ratio features in exec/Step1.R
2015.03.16
multiSampleSeg Optimal and Heuristic C code.
2015.03.11
clusterPeaks C code.
LinDynProg.c renamed to cDPA to be consistent with paper.
2015.03.05
Do not use GSL headers for positive infinity cost; instead use
INFINITY defined in "math.h"
2015.03.03
fista.R interval regression code.
binSum C code sets count to -1 for profiles that are too short for the
number of bins requested.
2015.02.27
binSum C code for quickly computing sums over bins of constant size.
2014.11.10
warning when user requests X peaks but that model is infeasible.