BioMedR: Generating Various Molecular Representations for Chemicals,
Proteins, DNAs, RNAs and Their Interactions
Calculating 293 chemical descriptors and 14 kinds of chemical fingerprints, 9920 protein descriptors based on protein sequences, more than 6000 DNA/RNA descriptors from nucleotide sequences, and six types of interaction descriptors using three different combining strategies.
| Version: |
1.2.1 |
| Imports: |
RCurl, rjson, rcdk (≥ 3.3.2), Biostrings, GOSemSim, MASS, ChemmineR, fmcsR, pls, randomForest, utils, stats, graphics, methods, org.Hs.eg.db |
| Suggests: |
RUnit, BiocGenerics |
| Published: |
2019-07-05 |
| Author: |
Min-feng Zhu, Jie Dong,
Dong-sheng Cao |
| Maintainer: |
Min-feng Zhu <wind2zhu at 163.com> |
| BugReports: |
https://github.com/wind22zhu/BioMedR/issues |
| License: |
GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| URL: |
https://github.com/wind22zhu/BioMedR |
| NeedsCompilation: |
no |
| SystemRequirements: |
Java JDK 1.8 or higher |
| Materials: |
README |
| CRAN checks: |
BioMedR results |
Documentation:
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