Last updated on 2021-11-01 00:49:49 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.2 | 9.93 | 222.93 | 232.86 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.2 | 7.56 | 157.97 | 165.53 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.2 | 278.33 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.2 | 259.76 | OK | |||
| r-devel-windows-x86_64 | 1.2 | 16.00 | 193.00 | 209.00 | OK | |
| r-devel-windows-x86_64-gcc10-UCRT | 1.2 | ERROR | ||||
| r-patched-linux-x86_64 | 1.2 | 8.13 | 209.29 | 217.42 | OK | |
| r-patched-solaris-x86 | 1.2 | 332.50 | OK | |||
| r-release-linux-x86_64 | 1.2 | 8.71 | 205.48 | 214.19 | OK | |
| r-release-macos-arm64 | 1.2 | OK | ||||
| r-release-macos-x86_64 | 1.2 | OK | ||||
| r-release-windows-ix86+x86_64 | 1.2 | 17.00 | 256.00 | 273.00 | OK | |
| r-oldrel-macos-x86_64 | 1.2 | OK | ||||
| r-oldrel-windows-ix86+x86_64 | 1.2 | 16.00 | 353.00 | 369.00 | OK |
Version: 1.2
Check: tests
Result: ERROR
Running 'qMRI-test.R'
Running the tests in 'tests/qMRI-test.R' failed.
Complete output:
> library(qMRI)
Loading required package: awsMethods
Use the function setCores() to change the number of CPU cores.
> dataDir <- system.file("extdata",package="qMRI")
> #
> # set file names for T1w, MTw and PDw images
> #
> t1Names <- paste0("t1w_",1:8,".nii.gz")
> mtNames <- paste0("mtw_",1:6,".nii.gz")
> pdNames <- paste0("pdw_",1:8,".nii.gz")
> t1Files <- file.path(dataDir, t1Names)
> mtFiles <- file.path(dataDir, mtNames)
> pdFiles <- file.path(dataDir, pdNames)
> #
> # file names of mask and B1 field map
> #
> B1File <- file.path(dataDir, "B1map.nii.gz")
> maskFile <- file.path(dataDir, "mask.nii.gz")
> #
> # Acquisition parameters (TE, TR, Flip Angle) for T1w, MTw and PDw images
> #
> TE <- c(2.3, 4.6, 6.9, 9.2, 11.5, 13.8, 16.1, 18.4,
+ 2.3, 4.6, 6.9, 9.2, 11.5, 13.8,
+ 2.3, 4.6, 6.9, 9.2, 11.5, 13.8, 16.1, 18.4)
> TR <- rep(25, 22)
> FA <- c(rep(21, 8), rep(6, 6), rep(6, 8))
> #
> # read MPM example data
> #
> library(qMRI)
> mpm <- readMPMData(t1Files, pdFiles, mtFiles,
+ maskFile, TR = TR, TE = TE,
+ FA = FA, verbose = FALSE)
> #
> # Estimate Parameters in the ESTATICS model
> #
> modelMPM <- estimateESTATICS(mpm, method = "NLR", verbose=FALSE)
> #
> # smooth maps of ESTATICS Parameters
> #
> setCores(2, reprt = FALSE)
> modelMPMsp1 <- smoothESTATICS(modelMPM,
+ kstar = 16,
+ alpha = 0.004,
+ patchsize=1,
+ verbose = FALSE)
Flavor: r-devel-windows-x86_64-gcc10-UCRT
Version: 1.2
Check: running R code from vignettes
Result: ERROR
Errors in running code in vignettes:
when running code in 'qMRI-Example.Rnw'
> options(digits = 3)
> dataDir <- system.file("extdata", package = "qMRI")
> t1Names <- paste0("t1w_", 1:8, ".nii.gz")
> mtNames <- paste0("mtw_", 1:6, ".nii.gz")
> pdNames <- paste0("pdw_", 1:8, ".nii.gz")
> t1Files <- file.path(dataDir, t1Names)
> mtFiles <- file.path(dataDir, mtNames)
> pdFiles <- file.path(dataDir, pdNames)
> B1File <- file.path(dataDir, "B1map.nii.gz")
> maskFile <- file.path(dataDir, "mask.nii.gz")
> TE <- c(2.3, 4.6, 6.9, 9.2, 11.5, 13.8, 16.1, 18.4,
+ 2.3, 4.6, 6.9, 9.2, 11.5, 13.8, 2.3, 4.6, 6.9, 9.2, 11.5,
+ 13.8, 16.1, 18.4)
> TR <- rep(25, 22)
> FA <- c(rep(21, 8), rep(6, 6), rep(6, 8))
> library(qMRI)
Loading required package: awsMethods
Use the function setCores() to change the number of CPU cores.
> mpm <- readMPMData(t1Files, pdFiles, mtFiles, maskFile,
+ TR = TR, TE = TE, FA = FA, verbose = FALSE)
> modelMPM <- estimateESTATICS(mpm, method = "NLR",
+ verbose = FALSE)
> setCores(2, reprt = FALSE)
> modelMPMQLsp1 <- smoothESTATICS(modelMPM, mpmData = extract(mpm,
+ "ddata"), kstar = 16, alpha = 0.004, patchsize = 1, verbose = FALSE)
... incomplete output. Crash?
'qMRI-Example.Rnw'... failed to complete the test
Flavor: r-devel-windows-x86_64-gcc10-UCRT
Version: 1.2
Check: re-building of vignette outputs
Result: NOTE
Error(s) in re-building vignettes:
--- re-building 'qMRI-Example.Rnw' using Sweave
Loading required package: awsMethods
Use the function setCores() to change the number of CPU cores.
Flavor: r-devel-windows-x86_64-gcc10-UCRT