CRAN Package Check Results for Package clinDataReview

Last updated on 2021-11-01 00:49:34 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.2.1 12.93 158.69 171.62 OK
r-devel-linux-x86_64-debian-gcc 1.2.1 9.77 115.27 125.04 OK
r-devel-linux-x86_64-fedora-clang 1.2.1 206.28 NOTE
r-devel-linux-x86_64-fedora-gcc 1.2.1 195.41 OK
r-devel-windows-x86_64 1.2.1 20.00 204.00 224.00 NOTE
r-devel-windows-x86_64-gcc10-UCRT 1.2.1 OK
r-patched-linux-x86_64 1.2.1 14.23 152.33 166.56 OK
r-patched-solaris-x86 1.2.1 220.00 ERROR
r-release-linux-x86_64 1.2.1 12.17 150.77 162.94 OK
r-release-macos-arm64 1.2.1 NOTE
r-release-macos-x86_64 1.2.1 WARN
r-release-windows-ix86+x86_64 1.2.1 19.00 150.00 169.00 NOTE
r-oldrel-macos-x86_64 1.2.1 WARN
r-oldrel-windows-ix86+x86_64 1.2.1 22.00 229.00 251.00 NOTE

Check Details

Version: 1.2.1
Check: installed package size
Result: NOTE
     installed size is 7.2Mb
     sub-directories of 1Mb or more:
     doc 5.4Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-x86_64, r-patched-solaris-x86, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-ix86+x86_64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.2.1
Check: tests
Result: ERROR
     Running ‘testthat.R’ [30s/39s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library(testthat)
     > library(clinDataReview)
     >
     > test_check("clinDataReview")
     adding: report.html (deflated 63%)
     adding: report_dependencies46f95dae408/ (stored 0%)
     adding: report_dependencies46f95dae408/file46f95d4173e9.html (deflated 8%)
     ══ Skipped tests ═══════════════════════════════════════════════════════════════
     • On CRAN (23)
     • pandoc is not available (3)
    
     ══ Failed tests ════════════════════════════════════════════════════════════════
     ── Error (test_reportingTemplates.R:20:2): A config file with all required parameters is checked successfully ──
     <std::invalid_argument/C++Error/error/condition>
     Error in `context_eval(join(src), private$context, serialize)`: SyntaxError: Unexpected token const
     Backtrace:
     █
     1. ├─testthat::expect_silent(checkConfigFile(configFileDivision, configSpecFile = refConfig)) test_reportingTemplates.R:20:8
     2. │ └─testthat:::quasi_capture(enquo(object), NULL, evaluate_promise)
     3. │ ├─testthat:::.capture(...)
     4. │ │ ├─withr::with_output_sink(...)
     5. │ │ │ └─base::force(code)
     6. │ │ ├─base::withCallingHandlers(...)
     7. │ │ └─base::withVisible(code)
     8. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
     9. └─clinDataReview::checkConfigFile(configFileDivision, configSpecFile = refConfig)
     10. └─jsonvalidate::json_validator(configSpecFile)
     11. └─jsonvalidate:::jsonvalidate_js()
     12. └─ct$source(system.file("bundle.js", package = "jsonvalidate"))
     13. └─V8:::evaluate_js(readLines(file, encoding = "UTF-8", warn = FALSE))
     14. ├─V8:::get_str_output(...)
     15. └─V8:::context_eval(join(src), private$context, serialize)
    
     [ FAIL 1 | WARN 0 | SKIP 26 | PASS 422 ]
     Error: Test failures
     Execution halted
Flavor: r-patched-solaris-x86

Version: 1.2.1
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building ‘clinDataReview-dataPreprocessing.Rmd’ using rmarkdown
    Pandoc is required to build R Markdown vignettes but not available. Please make sure it is installed.
    Data annotated with variable(s): ETHNIC ('ETHNIC'), ARM ('ARM') from the 'custom' dataset based on the variable(s): USUBJID ('USUBJID').
    354 records with ARM ('ARM') %in% 'Placebo' are filtered in data.
    --- finished re-building ‘clinDataReview-dataPreprocessing.Rmd’
    
    --- re-building ‘clinDataReview-dataVisualization.Rmd’ using rmarkdown
    Pandoc is required to build R Markdown vignettes but not available. Please make sure it is installed.
    Loading required package: ggplot2
    
    Attaching package: 'plotly'
    
    The following object is masked from 'package:ggplot2':
    
     last_plot
    
    The following object is masked from 'package:stats':
    
     filter
    
    The following object is masked from 'package:graphics':
    
     layout
    
    Quitting from lines 95-117 (clinDataReview-dataVisualization.Rmd)
    Error: processing vignette 'clinDataReview-dataVisualization.Rmd' failed with diagnostics:
    object 'params' not found
    --- failed re-building ‘clinDataReview-dataVisualization.Rmd’
    
    --- re-building ‘clinDataReview-reporting.Rmd’ using rmarkdown
    Pandoc is required to build R Markdown vignettes but not available. Please make sure it is installed.
    --- finished re-building ‘clinDataReview-reporting.Rmd’
    
    SUMMARY: processing the following file failed:
     ‘clinDataReview-dataVisualization.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavors: r-release-macos-x86_64, r-oldrel-macos-x86_64