Last updated on 2021-11-01 00:49:34 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.2.1 | 12.93 | 158.69 | 171.62 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.2.1 | 9.77 | 115.27 | 125.04 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.2.1 | 206.28 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 1.2.1 | 195.41 | OK | |||
| r-devel-windows-x86_64 | 1.2.1 | 20.00 | 204.00 | 224.00 | NOTE | |
| r-devel-windows-x86_64-gcc10-UCRT | 1.2.1 | OK | ||||
| r-patched-linux-x86_64 | 1.2.1 | 14.23 | 152.33 | 166.56 | OK | |
| r-patched-solaris-x86 | 1.2.1 | 220.00 | ERROR | |||
| r-release-linux-x86_64 | 1.2.1 | 12.17 | 150.77 | 162.94 | OK | |
| r-release-macos-arm64 | 1.2.1 | NOTE | ||||
| r-release-macos-x86_64 | 1.2.1 | WARN | ||||
| r-release-windows-ix86+x86_64 | 1.2.1 | 19.00 | 150.00 | 169.00 | NOTE | |
| r-oldrel-macos-x86_64 | 1.2.1 | WARN | ||||
| r-oldrel-windows-ix86+x86_64 | 1.2.1 | 22.00 | 229.00 | 251.00 | NOTE |
Version: 1.2.1
Check: installed package size
Result: NOTE
installed size is 7.2Mb
sub-directories of 1Mb or more:
doc 5.4Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-x86_64, r-patched-solaris-x86, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-ix86+x86_64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64
Version: 1.2.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [30s/39s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(clinDataReview)
>
> test_check("clinDataReview")
adding: report.html (deflated 63%)
adding: report_dependencies46f95dae408/ (stored 0%)
adding: report_dependencies46f95dae408/file46f95d4173e9.html (deflated 8%)
══ Skipped tests ═══════════════════════════════════════════════════════════════
• On CRAN (23)
• pandoc is not available (3)
══ Failed tests ════════════════════════════════════════════════════════════════
── Error (test_reportingTemplates.R:20:2): A config file with all required parameters is checked successfully ──
<std::invalid_argument/C++Error/error/condition>
Error in `context_eval(join(src), private$context, serialize)`: SyntaxError: Unexpected token const
Backtrace:
█
1. ├─testthat::expect_silent(checkConfigFile(configFileDivision, configSpecFile = refConfig)) test_reportingTemplates.R:20:8
2. │ └─testthat:::quasi_capture(enquo(object), NULL, evaluate_promise)
3. │ ├─testthat:::.capture(...)
4. │ │ ├─withr::with_output_sink(...)
5. │ │ │ └─base::force(code)
6. │ │ ├─base::withCallingHandlers(...)
7. │ │ └─base::withVisible(code)
8. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
9. └─clinDataReview::checkConfigFile(configFileDivision, configSpecFile = refConfig)
10. └─jsonvalidate::json_validator(configSpecFile)
11. └─jsonvalidate:::jsonvalidate_js()
12. └─ct$source(system.file("bundle.js", package = "jsonvalidate"))
13. └─V8:::evaluate_js(readLines(file, encoding = "UTF-8", warn = FALSE))
14. ├─V8:::get_str_output(...)
15. └─V8:::context_eval(join(src), private$context, serialize)
[ FAIL 1 | WARN 0 | SKIP 26 | PASS 422 ]
Error: Test failures
Execution halted
Flavor: r-patched-solaris-x86
Version: 1.2.1
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
--- re-building ‘clinDataReview-dataPreprocessing.Rmd’ using rmarkdown
Pandoc is required to build R Markdown vignettes but not available. Please make sure it is installed.
Data annotated with variable(s): ETHNIC ('ETHNIC'), ARM ('ARM') from the 'custom' dataset based on the variable(s): USUBJID ('USUBJID').
354 records with ARM ('ARM') %in% 'Placebo' are filtered in data.
--- finished re-building ‘clinDataReview-dataPreprocessing.Rmd’
--- re-building ‘clinDataReview-dataVisualization.Rmd’ using rmarkdown
Pandoc is required to build R Markdown vignettes but not available. Please make sure it is installed.
Loading required package: ggplot2
Attaching package: 'plotly'
The following object is masked from 'package:ggplot2':
last_plot
The following object is masked from 'package:stats':
filter
The following object is masked from 'package:graphics':
layout
Quitting from lines 95-117 (clinDataReview-dataVisualization.Rmd)
Error: processing vignette 'clinDataReview-dataVisualization.Rmd' failed with diagnostics:
object 'params' not found
--- failed re-building ‘clinDataReview-dataVisualization.Rmd’
--- re-building ‘clinDataReview-reporting.Rmd’ using rmarkdown
Pandoc is required to build R Markdown vignettes but not available. Please make sure it is installed.
--- finished re-building ‘clinDataReview-reporting.Rmd’
SUMMARY: processing the following file failed:
‘clinDataReview-dataVisualization.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-release-macos-x86_64, r-oldrel-macos-x86_64