A series of statistical and plotting approaches in microbial community ecology based on the R6 class. The classes are designed for data preprocessing, taxa abundance plotting, alpha diversity statistics, beta diversity statistics, differential abundance test and indicator taxon analysis, environmental data analysis, null model analysis, network analysis and functional analysis.
| Version: | 0.3.1 |
| Depends: | R (≥ 3.5.0) |
| Imports: | R6, stats, ape, vegan, rlang, data.table, magrittr, dplyr, tibble, scales, grid, ggplot2, RColorBrewer |
| Suggests: | reshape2, GUniFrac, MASS, ggpubr, randomForest, ggdendro, ggrepel, agricolae, gridExtra, picante, pheatmap, igraph, rgexf, tidytree, mice, ggtree, phyloseq |
| Published: | 2020-11-24 |
| Author: | Chi Liu [aut, cre], Minjie Yao [aut], Xiangzhen Li [aut], Paul J. McMurdie [ctb], Yang Cao [ctb], James Robert White [ctb], Stilianos Louca [cph], Nhu H. Nguyen [cph] |
| Maintainer: | Chi Liu <liuchi0426 at 126.com> |
| License: | GPL-3 |
| NeedsCompilation: | no |
| Citation: | microeco citation info |
| CRAN checks: | microeco results |
| Reference manual: | microeco.pdf |
| Package source: | microeco_0.3.1.tar.gz |
| Windows binaries: | r-devel: microeco_0.3.1.zip, r-release: microeco_0.3.1.zip, r-oldrel: microeco_0.3.1.zip |
| macOS binaries: | r-release: microeco_0.3.1.tgz, r-oldrel: microeco_0.3.1.tgz |
| Old sources: | microeco archive |
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