microeco: Microbial Community Ecology Data Analysis

A series of statistical and plotting approaches in microbial community ecology based on the R6 class. The classes are designed for data preprocessing, taxa abundance plotting, alpha diversity statistics, beta diversity statistics, differential abundance test and indicator taxon analysis, environmental data analysis, null model analysis, network analysis and functional analysis.

Version: 0.3.1
Depends: R (≥ 3.5.0)
Imports: R6, stats, ape, vegan, rlang, data.table, magrittr, dplyr, tibble, scales, grid, ggplot2, RColorBrewer
Suggests: reshape2, GUniFrac, MASS, ggpubr, randomForest, ggdendro, ggrepel, agricolae, gridExtra, picante, pheatmap, igraph, rgexf, tidytree, mice, ggtree, phyloseq
Published: 2020-11-24
Author: Chi Liu [aut, cre], Minjie Yao [aut], Xiangzhen Li [aut], Paul J. McMurdie [ctb], Yang Cao [ctb], James Robert White [ctb], Stilianos Louca [cph], Nhu H. Nguyen [cph]
Maintainer: Chi Liu <liuchi0426 at 126.com>
License: GPL-3
NeedsCompilation: no
Citation: microeco citation info
CRAN checks: microeco results


Reference manual: microeco.pdf
Package source: microeco_0.3.1.tar.gz
Windows binaries: r-devel: microeco_0.3.1.zip, r-release: microeco_0.3.1.zip, r-oldrel: microeco_0.3.1.zip
macOS binaries: r-release: microeco_0.3.1.tgz, r-oldrel: microeco_0.3.1.tgz
Old sources: microeco archive


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