adaptiveGPCA: Adaptive Generalized PCA

Implements adaptive gPCA, as described in: Fukuyama, J. (2017) <arXiv:1702.00501>. The package also includes functionality for applying the method to 'phyloseq' objects so that the method can be easily applied to microbiome data and a 'shiny' app for interactive visualization.

Version: 0.1.2
Depends: R (≥ 3.1.0)
Imports: ape (≥ 3.1.4), ggplot2 (≥ 1.0.0), shiny (≥ 1.0.0), phyloseq (≥ 1.14.0)
Suggests: knitr, rmarkdown
Published: 2018-03-14
Author: Julia Fukuyama [aut, cre]
Maintainer: Julia Fukuyama <julia.fukuyama at>
License: AGPL-3
NeedsCompilation: no
CRAN checks: adaptiveGPCA results


Reference manual: adaptiveGPCA.pdf
Vignettes: adaptvieGPCA vignette
Package source: adaptiveGPCA_0.1.2.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
macOS binaries: r-release: adaptiveGPCA_0.1.2.tgz, r-oldrel: adaptiveGPCA_0.1.2.tgz
Old sources: adaptiveGPCA archive

Reverse dependencies:

Reverse imports: smartdata
Reverse suggests: treeDA


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