strataG: Summaries and Population Structure Analyses of Genetic Data

A toolkit for analyzing stratified population genetic data. Functions are provided for summarizing and checking loci (haploid, diploid, and polyploid), single stranded DNA sequences, calculating most population subdivision metrics, and running external programs such as structure and fastsimcoal. The package is further described in Archer et al (2016) <doi:10.1111/1755-0998.12559>.

Version: 2.4.905
Depends: R (≥ 3.5.0)
Imports: ape, apex (≥ 1.0.3), adegenet, dplyr (≥ 0.7.6), tibble (≥ 1.4.2), tidyr (≥ 0.8.1), purrr (≥ 0.2.5), data.table (≥ 1.11.4), copula, DT, genepop (≥ 1.0.5), ggplot2, graphics, grid, gridExtra, Hmisc (≥ 4.1), magrittr (≥ 1.5), methods, pegas (≥ 0.11), phangorn (≥ 2.4.0), RColorBrewer, Rcpp, readr, rlang (≥ 0.3.0.1), rmetasim, stats, stringi, swfscMisc (≥ 1.3), utils
LinkingTo: Rcpp
Suggests: knitr, rmarkdown, testthat, qgraph, hierfstat
Published: 2020-02-28
Author: Eric Archer [aut, cre], Paula Adams [aut], Brita Schneiders [aut], Sarina Fernandez [aut], Warren Asfazadour [aut]
Maintainer: Eric Archer <eric.archer at noaa.gov>
BugReports: https://github.com/EricArcher/strataG/issues
License: GPL-2 | GPL-3 [expanded from: GNU General Public License]
URL: https://github.com/EricArcher/strataG
NeedsCompilation: yes
Citation: strataG citation info
Materials: README
CRAN checks: strataG results

Downloads:

Reference manual: strataG.pdf
Vignettes: Installing External Programs
Creating and manipulating gtypes
Tests of population structure
Working with sequences
Genotype and sequence summaries
Package source: strataG_2.4.905.tar.gz
Windows binaries: r-prerelease: strataG_2.4.905.zip, r-release: strataG_2.4.905.zip, r-oldrel: strataG_2.4.905.zip
macOS binaries: r-prerelease: strataG_2.4.905.tgz, r-release: strataG_2.4.905.tgz, r-oldrel: strataG_2.4.905.tgz
Old sources: strataG archive

Linking:

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