popkin: Estimate Kinship and FST under Arbitrary Population Structure

Provides functions to estimate the kinship matrix of individuals from a large set of biallelic SNPs, and extract inbreeding coefficients and the generalized FST (Wright's fixation index). Method described in Ochoa and Storey (2016) <doi:10.1101/083923>.

Version: 1.3.0
Imports: Rcpp (≥ 0.12.10), RColorBrewer, graphics, grDevices
LinkingTo: Rcpp, RcppEigen
Suggests: BEDMatrix, testthat, knitr, rmarkdown, lfa
Published: 2019-12-17
Author: Alejandro Ochoa ORCID iD [aut, cre], John D. Storey ORCID iD [aut]
Maintainer: Alejandro Ochoa <alejandro.ochoa at duke.edu>
BugReports: https://github.com/StoreyLab/popkin/issues
License: GPL-3
URL: https://github.com/StoreyLab/popkin/
NeedsCompilation: yes
Citation: popkin citation info
Materials: README NEWS
CRAN checks: popkin results

Downloads:

Reference manual: popkin.pdf
Vignettes: Estimate Kinship and FST under Arbitrary Population Structure
Package source: popkin_1.3.0.tar.gz
Windows binaries: r-prerelease: popkin_1.3.0.zip, r-release: popkin_1.3.0.zip, r-oldrel: popkin_1.3.0.zip
macOS binaries: r-prerelease: popkin_1.3.0.tgz, r-release: popkin_1.3.0.tgz, r-oldrel: popkin_1.3.0.tgz
Old sources: popkin archive

Reverse dependencies:

Reverse suggests: bnpsd, ggmix

Linking:

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