jSDM: Joint Species Distribution Models

Fits joint species distribution models ('jSDM') in a hierarchical Bayesian framework (Warton et al. 2015 <doi:10.1016/j.tree.2015.09.007>). The Gibbs sampler is written in C++. It uses 'Rcpp', 'Armadillo' and 'GSL' to maximize computation efficiency.

Version: 0.1.0
Imports: Rcpp (≥ 1.0.0), graphics, stats, coda, corrplot
LinkingTo: Rcpp, RcppArmadillo, RcppGSL
Suggests: knitr, raster, sp, rmarkdown, bookdown, testthat, boral
Published: 2019-07-02
Author: Ghislain Vieilledent ORCID iD [aut, cre], Jeanne Clément ORCID iD [aut], CIRAD [cph, fnd]
Maintainer: Ghislain Vieilledent <ghislain.vieilledent at cirad.fr>
BugReports: https://github.com/ghislainv/jSDM/issues
License: GPL-3 | file LICENSE
URL: https://ecology.ghislainv.fr/jSDM, https://github.com/ghislainv/jSDM
NeedsCompilation: yes
SystemRequirements: GNU GSL
Materials: README NEWS
CRAN checks: jSDM results

Downloads:

Reference manual: jSDM.pdf
Vignettes: Get started with jSDM
Package source: jSDM_0.1.0.tar.gz
Windows binaries: r-prerelease: jSDM_0.1.0.zip, r-release: jSDM_0.1.0.zip, r-oldrel: jSDM_0.1.0.zip
macOS binaries: r-prerelease: jSDM_0.1.0.tgz, r-release: jSDM_0.1.0.tgz, r-oldrel: jSDM_0.1.0.tgz

Linking:

Please use the canonical form https://CRAN.R-project.org/package=jSDM to link to this page.