hisse: Hidden State Speciation and Extinction

Sets up and executes a HiSSE model (Hidden State Speciation and Extinction) on a phylogeny and character sets to test for hidden shifts in trait dependent rates of diversification. Beaulieu and O'Meara (2016) <doi:10.1093/sysbio/syw022>.

Version: 1.9.6
Depends: ape, deSolve, GenSA, subplex, nloptr
Imports: parallel, phytools, data.table, methods, diversitree, plotrix
Suggests: testthat, knitr
Published: 2019-12-06
Author: Jeremy Beaulieu [aut, cre], Brian O'Meara [aut], Daniel Caetano [aut], James Boyko [aut]
Maintainer: Jeremy Beaulieu <jbeaulieu at nimbios.org>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: yes
Citation: hisse citation info
CRAN checks: hisse results


Reference manual: hisse.pdf
Vignettes: The Problem with Clade-specific Sampling Fractions
Running GeoHiSSE
Running MiSSE
Running MuHiSSE
Type I errors, Model rejection, & HiSSE vs. FiSSE
Running hisse
Package source: hisse_1.9.6.tar.gz
Windows binaries: r-prerelease: hisse_1.9.6.zip, r-release: hisse_1.9.6.zip, r-oldrel: hisse_1.9.6.zip
macOS binaries: r-prerelease: hisse_1.9.6.tgz, r-release: hisse_1.9.6.tgz, r-oldrel: hisse_1.9.6.tgz
Old sources: hisse archive

Reverse dependencies:

Reverse suggests: fishtree


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