epiphy: Analysis of Plant Disease Epidemics

A toolbox to make it easy to analyze plant disease epidemics. It provides a common framework for plant disease intensity data recorded over time and/or space. Implemented statistical methods are currently mainly focused on spatial pattern analysis (e.g., aggregation indices, Taylor and binary power laws, distribution fitting, SADIE and mapcomp methods). See Madden LV, Hughes G, van den Bosch F (2007, ISBN: 978-089054-354-2) for further information on these methods. Several data sets that were mainly published in plant disease epidemiology literature are also included in this package.

Version: 0.3.4
Depends: R (≥ 2.15.1)
Imports: stats, methods, utils, grDevices, ggplot2, transport, msm, pbapply, Rcpp
LinkingTo: Rcpp
Suggests: magrittr, dplyr, tidyr, spdep, emdist, vegan, MASS, emdbook, knitr, rmarkdown
Published: 2018-05-24
Author: Christophe Gigot ORCID iD [aut, cre]
Maintainer: Christophe Gigot <ch.gigot at gmail.com>
BugReports: https://github.com/chgigot/epiphy/issues
License: MIT + file LICENSE
URL: http://epiphy.org, https://github.com/chgigot/epiphy
NeedsCompilation: yes
Materials: README NEWS
CRAN checks: epiphy results

Downloads:

Reference manual: epiphy.pdf
Vignettes: Definitions and relationships between parameters
Analyzing plant disease epidemics with the R package epiphy
Package source: epiphy_0.3.4.tar.gz
Windows binaries: r-prerelease: epiphy_0.3.4.zip, r-release: epiphy_0.3.4.zip, r-oldrel: epiphy_0.3.4.zip
macOS binaries: r-prerelease: epiphy_0.3.4.tgz, r-release: epiphy_0.3.4.tgz, r-oldrel: epiphy_0.3.4.tgz

Linking:

Please use the canonical form https://CRAN.R-project.org/package=epiphy to link to this page.