bgsmtr: Bayesian Group Sparse Multi-Task Regression

Implementation of Bayesian multi-task regression models and was developed within the context of imaging genetics. The package can currently fit two models. The Bayesian group sparse multi-task regression model of Greenlaw et al. (2017)<doi:10.1093/bioinformatics/btx215> can be fit with implementation using Gibbs sampling. An extension of this model developed by Song, Ge et al. to accommodate both spatial correlation as well as correlation across brain hemispheres can also be fit using either mean-field variational Bayes or Gibbs sampling. The model can also be used more generally for multivariate (non-imaging) phenotypes with spatial correlation.

Version: 0.7
Depends: R (≥ 3.5.0), Matrix (≥ 1.2.6), mvtnorm (≥ 1.0.5), matrixcalc (≥ 1.0.3), miscTools (≥ 0.6.22)
Imports: coda (≥ 0.18.1), EDISON (≥ 1.1.1), statmod (≥ 1.4.26), methods (≥ 3.3.3), sparseMVN (> 0.2.0), inline (≥ 0.3.15), LaplacesDemon (≥ 16.1.0), glmnet (≥ 2.0.13), CholWishart (≥ 0.9.3), mnormt (≥ 1.5.4), Rcpp (≥ 0.12.14)
Published: 2019-12-13
Author: Yin Song, Shufei Ge, Liangliang Wang, Jiguo Cao, Keelin Greenlaw, Mary Lesperance, Farouk S. Nathoo
Maintainer: Yin Song <yinsong at uvic.ca>
License: GPL-2
NeedsCompilation: no
CRAN checks: bgsmtr results

Downloads:

Reference manual: bgsmtr.pdf
Package source: bgsmtr_0.7.tar.gz
Windows binaries: r-prerelease: bgsmtr_0.7.zip, r-release: bgsmtr_0.7.zip, r-oldrel: bgsmtr_0.7.zip
macOS binaries: r-prerelease: bgsmtr_0.7.tgz, r-release: bgsmtr_0.7.tgz, r-oldrel: bgsmtr_0.7.tgz
Old sources: bgsmtr archive

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