amtThis vignette briefly introduces how one can coerce amt track_xy* to other commonly used packages. At the moment this vignette shows methods to coerce to adehabitatHR, ctmm, and move.
First we load the required libraries and the relocation data (called deer)
## # A tibble: 826 x 4
## x_ y_ t_ burst_
## * <dbl> <dbl> <dttm> <dbl>
## 1 4314068. 3445807. 2008-03-30 00:01:47 1
## 2 4314053. 3445768. 2008-03-30 06:00:54 1
## 3 4314105. 3445859. 2008-03-30 12:01:47 1
## 4 4314044. 3445785. 2008-03-30 18:01:24 1
## 5 4313015. 3445858. 2008-03-31 00:01:23 1
## 6 4312860. 3445857. 2008-03-31 06:01:45 1
## 7 4312854. 3445856. 2008-03-31 12:01:11 1
## 8 4312858. 3445858. 2008-03-31 18:01:55 1
## 9 4312745. 3445862. 2008-04-01 00:01:24 1
## 10 4312651. 3446024. 2008-04-01 06:00:54 1
## # … with 816 more rowsadehbatit*##
## *********** List of class ltraj ***********
##
## Type of the traject: Type II (time recorded)
## * Time zone: UTC *
## Irregular traject. Variable time lag between two locs
##
## Characteristics of the bursts:
## id burst nb.reloc NAs date.begin date.end
## 1 animal_1 animal_1 826 0 2008-03-30 00:01:47 2009-04-28 00:00:21
##
##
## infolocs provided. The following variables are available:
## [1] "pkey"ctmmWith the function as_telemetry a track_xyt can be coerced to a telemetry object used in ctmm.
## [1] "telemetry"
## attr(,"package")
## [1] "ctmm"move## class : Move
## features : 826
## extent : 4309723, 4318383, 3442716, 3450713 (xmin, xmax, ymin, ymax)
## crs : +init=epsg:3035 +proj=laea +lat_0=52 +lon_0=10 +x_0=4321000 +y_0=3210000 +ellps=GRS80 +towgs84=0,0,0,0,0,0,0 +units=m +no_defs
## variables : 1
## names : burst_
## min values : 1
## max values : 35
## timestamps : 2008-03-30 00:01:47 ... 2009-04-28 00:00:21 Time difference of 394 days (start ... end, duration)
## sensors : unknown
## indiv. data :
## indiv. value:
## date created: 2019-09-18 13:45:25.315127sf and sp## ─ Session info ───────────────────────────────────────────────────────────────
## setting value
## version R version 3.6.3 (2020-02-29)
## os Ubuntu 18.04.4 LTS
## system x86_64, linux-gnu
## ui X11
## language en_US:en
## collate C
## ctype en_US.UTF-8
## tz Europe/Berlin
## date 2020-04-23
##
## ─ Packages ───────────────────────────────────────────────────────────────────
## package * version date lib source
## ade4 1.7-13 2018-08-31 [3] CRAN (R 3.6.1)
## adehabitatLT 0.3.24 2019-04-07 [3] CRAN (R 3.6.1)
## adehabitatMA 0.3.13 2019-04-07 [3] CRAN (R 3.6.1)
## amt * 0.1.0 2020-04-23 [1] local
## assertthat 0.2.1 2019-03-21 [3] CRAN (R 3.6.1)
## backports 1.1.6 2020-04-05 [3] CRAN (R 3.6.3)
## boot 1.3-24 2019-12-20 [6] CRAN (R 3.6.2)
## callr 3.4.3 2020-03-28 [3] CRAN (R 3.6.3)
## checkmate 2.0.0 2020-02-06 [3] CRAN (R 3.6.1)
## CircStats 0.2-6 2018-07-01 [3] CRAN (R 3.6.1)
## circular 0.4-93 2017-06-29 [3] CRAN (R 3.6.1)
## class 7.3-15 2019-01-01 [6] CRAN (R 3.6.0)
## classInt 0.4-2 2019-10-17 [3] CRAN (R 3.6.1)
## cli 2.0.2 2020-02-28 [3] CRAN (R 3.6.1)
## codetools 0.2-16 2018-12-24 [6] CRAN (R 3.6.0)
## colorspace 1.4-1 2019-03-18 [3] CRAN (R 3.6.1)
## crayon 1.3.4 2017-09-16 [3] CRAN (R 3.6.1)
## ctmm 0.5.9 2020-03-23 [3] CRAN (R 3.6.3)
## DBI 1.1.0 2019-12-15 [3] CRAN (R 3.6.1)
## DEoptimR 1.0-8 2016-11-19 [3] CRAN (R 3.6.1)
## desc 1.2.0 2018-05-01 [3] CRAN (R 3.6.1)
## devtools 2.2.2.9000 2020-04-23 [3] Github (r-lib/devtools@b166195)
## digest 0.6.25 2020-02-23 [3] CRAN (R 3.6.1)
## dplyr * 0.8.5 2020-03-07 [3] CRAN (R 3.6.1)
## e1071 1.7-3 2019-11-26 [3] CRAN (R 3.6.1)
## ellipsis 0.3.0 2019-09-20 [3] CRAN (R 3.6.1)
## evaluate 0.14 2019-05-28 [3] CRAN (R 3.6.1)
## fansi 0.4.1 2020-01-08 [3] CRAN (R 3.6.1)
## farver 2.0.3 2020-01-16 [3] CRAN (R 3.6.1)
## fitdistrplus 1.0-14 2019-01-23 [3] CRAN (R 3.6.1)
## fs 1.4.1 2020-04-04 [3] CRAN (R 3.6.3)
## geosphere 1.5-10 2019-05-26 [3] CRAN (R 3.6.1)
## ggplot2 * 3.3.0 2020-03-05 [3] CRAN (R 3.6.1)
## glue 1.4.0 2020-04-03 [3] CRAN (R 3.6.3)
## Gmedian 1.2.5 2020-03-02 [3] CRAN (R 3.6.1)
## gtable 0.3.0 2019-03-25 [3] CRAN (R 3.6.1)
## htmltools 0.4.0 2019-10-04 [3] CRAN (R 3.6.1)
## httr 1.4.1 2019-08-05 [3] CRAN (R 3.6.1)
## KernSmooth 2.23-15 2015-06-29 [6] CRAN (R 3.5.0)
## knitr * 1.28 2020-02-06 [3] CRAN (R 3.6.3)
## labeling 0.3 2014-08-23 [3] CRAN (R 3.6.1)
## lattice 0.20-40 2020-02-19 [6] CRAN (R 3.6.2)
## lazyeval 0.2.2 2019-03-15 [3] CRAN (R 3.6.1)
## lifecycle 0.2.0 2020-03-06 [3] CRAN (R 3.6.1)
## lsei 1.2-0 2017-10-23 [3] CRAN (R 3.6.1)
## lubridate * 1.7.4 2018-04-11 [3] CRAN (R 3.6.1)
## magrittr 1.5 2014-11-22 [3] CRAN (R 3.6.1)
## MASS 7.3-51.5 2019-12-20 [6] CRAN (R 3.6.2)
## Matrix 1.2-17 2019-03-22 [6] CRAN (R 3.6.1)
## memoise 1.1.0 2017-04-21 [3] CRAN (R 3.6.1)
## move 3.2.2 2019-09-07 [3] CRAN (R 3.6.1)
## munsell 0.5.0 2018-06-12 [3] CRAN (R 3.6.1)
## mvtnorm 1.1-0 2020-02-24 [3] CRAN (R 3.6.1)
## npsurv 0.4-0 2017-10-14 [3] CRAN (R 3.6.1)
## pillar 1.4.3 2019-12-20 [3] CRAN (R 3.6.1)
## pkgbuild 1.0.6 2019-10-09 [3] CRAN (R 3.6.1)
## pkgconfig 2.0.3 2019-09-22 [3] CRAN (R 3.6.1)
## pkgload 1.0.2 2018-10-29 [3] CRAN (R 3.6.1)
## prettyunits 1.1.1 2020-01-24 [3] CRAN (R 3.6.1)
## processx 3.4.2 2020-02-09 [3] CRAN (R 3.6.1)
## ps 1.3.2 2020-02-13 [3] CRAN (R 3.6.1)
## purrr 0.3.4 2020-04-17 [3] CRAN (R 3.6.3)
## R6 2.4.1 2019-11-12 [3] CRAN (R 3.6.1)
## raster * 3.0-12 2020-01-30 [3] CRAN (R 3.6.1)
## Rcpp 1.0.4.6 2020-04-09 [3] CRAN (R 3.6.3)
## remotes 2.1.1 2020-02-15 [3] CRAN (R 3.6.3)
## rgdal 1.4-8 2019-11-27 [3] CRAN (R 3.6.3)
## rlang 0.4.5 2020-03-01 [3] CRAN (R 3.6.1)
## rmarkdown 2.0 2019-12-12 [3] CRAN (R 3.6.1)
## robustbase 0.93-6 2020-03-23 [3] CRAN (R 3.6.3)
## rprojroot 1.3-2 2018-01-03 [3] CRAN (R 3.6.1)
## RSpectra 0.16-0 2019-12-01 [3] CRAN (R 3.6.1)
## scales 1.1.0 2019-11-18 [3] CRAN (R 3.6.1)
## sessioninfo 1.1.1 2018-11-05 [3] CRAN (R 3.6.1)
## sf 0.9-0 2020-03-24 [3] CRAN (R 3.6.3)
## sp * 1.4-1 2020-02-28 [3] CRAN (R 3.6.3)
## stringi 1.4.6 2020-02-17 [3] CRAN (R 3.6.1)
## stringr 1.4.0 2019-02-10 [3] CRAN (R 3.6.1)
## survival 3.1-8 2019-12-03 [3] CRAN (R 3.6.1)
## testthat 2.3.2 2020-03-02 [3] CRAN (R 3.6.1)
## tibble 3.0.1.9000 2020-04-23 [3] Github (tidyverse/tibble@3892a7f)
## tidyr 1.0.2 2020-01-24 [3] CRAN (R 3.6.1)
## tidyselect 1.0.0 2020-01-27 [3] CRAN (R 3.6.1)
## units 0.6-6 2020-03-16 [3] CRAN (R 3.6.1)
## usethis 1.6.0 2020-04-09 [3] CRAN (R 3.6.3)
## utf8 1.1.4 2018-05-24 [3] CRAN (R 3.6.1)
## vctrs 0.2.4 2020-03-10 [3] CRAN (R 3.6.1)
## withr 2.2.0 2020-04-20 [3] CRAN (R 3.6.3)
## xfun 0.13 2020-04-13 [3] CRAN (R 3.6.3)
## xml2 1.3.1 2020-04-09 [3] CRAN (R 3.6.3)
## yaml 2.2.1 2020-02-01 [3] CRAN (R 3.6.3)
##
## [1] /tmp/Rtmp3TuR3g/Rinst55c47601aee6
## [2] /tmp/Rtmp8ySvX2/temp_libpath434e213f5de
## [3] /home/jsigner/R/x86_64-pc-linux-gnu-library/3.6
## [4] /usr/local/lib/R/site-library
## [5] /usr/lib/R/site-library
## [6] /usr/lib/R/library