Rtsne: T-Distributed Stochastic Neighbor Embedding using a Barnes-Hut Implementation

An R wrapper around the fast T-distributed Stochastic Neighbor Embedding implementation by Van der Maaten (see <https://github.com/lvdmaaten/bhtsne/> for more information on the original implementation).

Version: 0.15
Imports: Rcpp (≥ 0.11.0), stats
LinkingTo: Rcpp
Suggests: irlba, testthat
Published: 2018-11-10
Author: Jesse Krijthe [aut, cre], Laurens van der Maaten [cph] (Author of original C++ code)
Maintainer: Jesse Krijthe <jkrijthe at gmail.com>
License: file LICENSE
URL: https://github.com/jkrijthe/Rtsne
NeedsCompilation: yes
Citation: Rtsne citation info
Materials: README NEWS
CRAN checks: Rtsne results

Downloads:

Reference manual: Rtsne.pdf
Package source: Rtsne_0.15.tar.gz
Windows binaries: r-prerelease: Rtsne_0.15.zip, r-release: Rtsne_0.15.zip, r-oldrel: Rtsne_0.15.zip
macOS binaries: r-prerelease: Rtsne_0.15.tgz, r-release: Rtsne_0.15.tgz, r-oldrel: Rtsne_0.15.tgz
Old sources: Rtsne archive

Reverse dependencies:

Reverse depends: epihet, scAlign
Reverse imports: AutoPipe, CATALYST, ccfindR, celda, CellTrails, chromVAR, CINNA, densityClust, diceR, EmbedSOM, esetVis, FateID, fdm2id, flowSpy, HDclust, iCellR, labdsv, Linnorm, M3C, maotai, Mercator, microbiome, monocle, Onassis, oneSENSE, PAC, phemd, RaceID, randomcoloR, robustSingleCell, Sconify, scRNAtools, Seurat, sincell, singleCellTK, spathial, SubCellBarCode, visvow
Reverse suggests: AUCell, BloodCancerMultiOmics2017, CancerInSilico, clusterExperiment, cola, coRanking, DepecheR, dimRed, dyndimred, HDCytoData, iasva, iSEE, netSmooth, ProjectionBasedClustering, pRoloc, restfulSE, scater, scBFA, scds, scGPS, SingleCellExperiment, slinky, stm, themetagenomics, zinbwave

Linking:

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