CRAN Package Check Results for Package varTestnlme

Last updated on 2020-04-25 01:53:21 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.1.0 3.70 37.52 41.22 OK
r-devel-linux-x86_64-debian-gcc 0.1.0 3.42 29.83 33.25 OK
r-devel-linux-x86_64-fedora-clang 0.1.0 52.06 NOTE
r-devel-linux-x86_64-fedora-gcc 0.1.0 51.11 NOTE
r-devel-windows-ix86+x86_64 0.1.0 17.00 69.00 86.00 OK
r-patched-linux-x86_64 0.1.0 4.54 36.83 41.37 OK
r-patched-osx-x86_64 0.1.0 WARN
r-patched-solaris-x86 0.1.0 74.40 NOTE
r-release-linux-x86_64 0.1.0 3.25 34.00 37.25 OK
r-release-windows-ix86+x86_64 0.1.0 11.00 43.00 54.00 OK
r-release-osx-x86_64 0.1.0 NOTE
r-oldrel-windows-ix86+x86_64 0.1.0 7.00 62.00 69.00 OK
r-oldrel-osx-x86_64 0.1.0 NOTE

Check Details

Version: 0.1.0
Check: dependencies in R code
Result: NOTE
    Namespaces in Imports field not imported from:
     ‘matrixcalc’ ‘saemix’
     All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-osx-x86_64, r-patched-solaris-x86, r-release-osx-x86_64, r-oldrel-osx-x86_64

Version: 0.1.0
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building ‘varTestnlme.Rmd’ using rmarkdown
    Loading library varTestnlme
     please direct bugs, questions and feedback to charlotte.baey@univ-lille.fr
    
    Loading required package: Matrix
    
    Attaching package: 'lme4'
    
    The following object is masked from 'package:nlme':
    
     lmList
    
     Loading package saemix, version 2.3, December 2019
     please direct bugs, questions and feedback to emmanuelle.comets@inserm.fr
    
    Variance components testing in mixed-effects models
    
    (models fitted using thenlmepackage)
    
    
    Testing that the variance of age is null
    
    model under H1: distance ~ 1 + Sex + age + age * Sex (fixed effects) , ~1 + age | Subject (random effects)
    
    model under H0: distance ~ 1 + Sex + age + age * Sex (fixed effects) , ~1 | Subject (random effects)
    
    
    Likelihood ratio test statistics:
     LRT = 0.83311
    
    Limiting distribution:
    
    mixture of 2 chi-bar-square distributions with degrees of freedom 1, 2
    
    
    lower-bound for p-value: 0.51035 upper bound for p-value: 0.51035
    Variance components testing in mixed-effects models
    
    (models fitted using thenlmepackage)
    
    
    Testing that the variances of (Intercept) and age are null
    
    model under H1: distance ~ 1 + Sex + age + age * Sex (fixed effects) , list(Subject = pdDiag(~1 + age)) (random effects)
    
    model under H0: distance ~ 1 + Sex + age + age * Sex (fixed effects)
    
    
    Likelihood ratio test statistics:
     LRT = 50.133
    
    Limiting distribution:
    
    mixture of 3 chi-bar-square distributions with degrees of freedom 0, 1, 2
    
    
    lower-bound for p-value: 7.1831e-13 upper bound for p-value: 7.2152e-12
    Variance components testing in mixed-effects models
    
    (models fitted using thenlmepackage)
    
    
    Testing that the variances of (Intercept) and age are null
    
    model under H1: distance ~ 1 + Sex + age + age * Sex (fixed effects) , list(Subject = pdDiag(~1 + age)) (random effects)
    
    model under H0: distance ~ 1 + Sex + age + age * Sex (fixed effects)
    
    
    Extracting Fisher Information matrix...
    
    Likelihood ratio test statistics:
     LRT = 50.133
    
    Limiting distribution:
    
    mixture of 3 chi-bar-square distributions with degrees of freedom 0, 1, 2
    
     associated weights and sd: 0.377 (0), 0.5 (0), 0.123 (0)
    
    p-value (from estimated weights): 2.3164e-12
    
    lower-bound for p-value: 7.1831e-13 upper bound for p-value: 7.2152e-12
    dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    dyld: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    Error: processing vignette 'varTestnlme.Rmd' failed with diagnostics:
    pandoc document conversion failed with error 6
    --- failed re-building ‘varTestnlme.Rmd’
    
    SUMMARY: processing the following file failed:
     ‘varTestnlme.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-patched-osx-x86_64