CRAN Package Check Results for Package ubiquity

Last updated on 2020-04-25 01:53:21 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0.1 18.83 127.64 146.47 OK
r-devel-linux-x86_64-debian-gcc 1.0.1 14.82 97.94 112.76 OK
r-devel-linux-x86_64-fedora-clang 1.0.1 174.09 NOTE
r-devel-linux-x86_64-fedora-gcc 1.0.1 173.46 OK
r-devel-windows-ix86+x86_64 1.0.1 50.00 200.00 250.00 NOTE
r-patched-linux-x86_64 1.0.1 17.10 123.34 140.44 OK
r-patched-osx-x86_64 1.0.1 WARN
r-patched-solaris-x86 1.0.1 223.20 WARN
r-release-linux-x86_64 1.0.1 14.31 113.68 127.99 OK
r-release-windows-ix86+x86_64 1.0.1 43.00 147.00 190.00 NOTE
r-release-osx-x86_64 1.0.1 WARN
r-oldrel-windows-ix86+x86_64 1.0.1 21.00 185.00 206.00 NOTE
r-oldrel-osx-x86_64 1.0.1 WARN

Check Details

Version: 1.0.1
Check: installed package size
Result: NOTE
     installed size is 9.4Mb
     sub-directories of 1Mb or more:
     doc 6.4Mb
     ubinc 2.0Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-ix86+x86_64, r-patched-osx-x86_64, r-patched-solaris-x86, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 1.0.1
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building ‘Deployment.Rmd’ using rmarkdown
    dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    dyld: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    Error: processing vignette 'Deployment.Rmd' failed with diagnostics:
    pandoc document conversion failed with error 6
    --- failed re-building ‘Deployment.Rmd’
    
    --- re-building ‘Estimation.Rmd’ using rmarkdown
    dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    dyld: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    Error: processing vignette 'Estimation.Rmd' failed with diagnostics:
    pandoc document conversion failed with error 6
    --- failed re-building ‘Estimation.Rmd’
    
    --- re-building ‘Language.Rmd’ using rmarkdown
    dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    dyld: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    Error: processing vignette 'Language.Rmd' failed with diagnostics:
    pandoc document conversion failed with error 6
    --- failed re-building ‘Language.Rmd’
    
    --- re-building ‘NCA.Rmd’ using rmarkdown
    dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    dyld: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    Error: processing vignette 'NCA.Rmd' failed with diagnostics:
    pandoc document conversion failed with error 6
    --- failed re-building ‘NCA.Rmd’
    
    --- re-building ‘Reporting.Rmd’ using rmarkdown
    dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    dyld: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    Error: processing vignette 'Reporting.Rmd' failed with diagnostics:
    pandoc document conversion failed with error 6
    --- failed re-building ‘Reporting.Rmd’
    
    --- re-building ‘Simulation.Rmd’ using rmarkdown
    Loading required package: ubiquity
    Loading required package: deSolve
    Loading required package: ggplot2
    Loading required package: foreach
    Loading required package: doParallel
    Loading required package: iterators
    Loading required package: parallel
    Loading required package: rhandsontable
    dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    dyld: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    Error: processing vignette 'Simulation.Rmd' failed with diagnostics:
    pandoc document conversion failed with error 6
    --- failed re-building ‘Simulation.Rmd’
    
    --- re-building ‘Titration.Rmd’ using rmarkdown
    dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    dyld: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    Error: processing vignette 'Titration.Rmd' failed with diagnostics:
    pandoc document conversion failed with error 6
    --- failed re-building ‘Titration.Rmd’
    
    SUMMARY: processing the following files failed:
     ‘Deployment.Rmd’ ‘Estimation.Rmd’ ‘Language.Rmd’ ‘NCA.Rmd’
     ‘Reporting.Rmd’ ‘Simulation.Rmd’ ‘Titration.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-patched-osx-x86_64

Version: 1.0.1
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building ‘Deployment.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    --- finished re-building ‘Deployment.Rmd’
    
    --- re-building ‘Estimation.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    --- finished re-building ‘Estimation.Rmd’
    
    --- re-building ‘Language.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    --- finished re-building ‘Language.Rmd’
    
    --- re-building ‘NCA.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    PhantomJS not found. You can install it with webshot::install_phantomjs(). If it is installed, please make sure the phantomjs executable can be found via the PATH variable.
    Quitting from lines 195-196 (NCA.Rmd)
    Error: processing vignette 'NCA.Rmd' failed with diagnostics:
    cannot open the connection
    --- failed re-building ‘NCA.Rmd’
    
    --- re-building ‘Reporting.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    --- finished re-building ‘Reporting.Rmd’
    
    --- re-building ‘Simulation.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Loading required package: ubiquity
    Loading required package: deSolve
    Loading required package: ggplot2
    Loading required package: foreach
    Loading required package: doParallel
    Loading required package: iterators
    Loading required package: parallel
    Loading required package: rhandsontable
    PhantomJS not found. You can install it with webshot::install_phantomjs(). If it is installed, please make sure the phantomjs executable can be found via the PATH variable.
    Quitting from lines 95-97 (Simulation.Rmd)
    Error: processing vignette 'Simulation.Rmd' failed with diagnostics:
    cannot open the connection
    --- failed re-building ‘Simulation.Rmd’
    
    --- re-building ‘Titration.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    PhantomJS not found. You can install it with webshot::install_phantomjs(). If it is installed, please make sure the phantomjs executable can be found via the PATH variable.
    Quitting from lines 278-279 (Titration.Rmd)
    Error: processing vignette 'Titration.Rmd' failed with diagnostics:
    cannot open the connection
    --- failed re-building ‘Titration.Rmd’
    
    SUMMARY: processing the following files failed:
     ‘NCA.Rmd’ ‘Simulation.Rmd’ ‘Titration.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-patched-solaris-x86

Version: 1.0.1
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building ‘Deployment.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    --- finished re-building ‘Deployment.Rmd’
    
    --- re-building ‘Estimation.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    --- finished re-building ‘Estimation.Rmd’
    
    --- re-building ‘Language.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    --- finished re-building ‘Language.Rmd’
    
    --- re-building ‘NCA.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    PhantomJS not found. You can install it with webshot::install_phantomjs(). If it is installed, please make sure the phantomjs executable can be found via the PATH variable.
    Quitting from lines 195-196 (NCA.Rmd)
    Error: processing vignette 'NCA.Rmd' failed with diagnostics:
    cannot open the connection
    --- failed re-building ‘NCA.Rmd’
    
    --- re-building ‘Reporting.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    --- finished re-building ‘Reporting.Rmd’
    
    --- re-building ‘Simulation.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Loading required package: ubiquity
    Loading required package: deSolve
    Loading required package: ggplot2
    Loading required package: foreach
    Loading required package: doParallel
    Loading required package: iterators
    Loading required package: parallel
    Loading required package: rhandsontable
    PhantomJS not found. You can install it with webshot::install_phantomjs(). If it is installed, please make sure the phantomjs executable can be found via the PATH variable.
    Quitting from lines 95-97 (Simulation.Rmd)
    Error: processing vignette 'Simulation.Rmd' failed with diagnostics:
    cannot open the connection
    --- failed re-building ‘Simulation.Rmd’
    
    --- re-building ‘Titration.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    PhantomJS not found. You can install it with webshot::install_phantomjs(). If it is installed, please make sure the phantomjs executable can be found via the PATH variable.
    Quitting from lines 278-279 (Titration.Rmd)
    Error: processing vignette 'Titration.Rmd' failed with diagnostics:
    cannot open the connection
    --- failed re-building ‘Titration.Rmd’
    
    SUMMARY: processing the following files failed:
     ‘NCA.Rmd’ ‘Simulation.Rmd’ ‘Titration.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-release-osx-x86_64

Version: 1.0.1
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    PhantomJS not found. You can install it with webshot::install_phantomjs(). If it is installed, please make sure the phantomjs executable can be found via the PATH variable.
    Quitting from lines 195-196 (NCA.Rmd)
    Error: processing vignette 'NCA.Rmd' failed with diagnostics:
    cannot open the connection
    Execution halted
Flavor: r-oldrel-osx-x86_64