CRAN Package Check Results for Package nosoi

Last updated on 2020-04-25 01:53:09 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0.2 6.65 326.45 333.10 OK
r-devel-linux-x86_64-debian-gcc 1.0.2 5.65 541.03 546.68 OK
r-devel-linux-x86_64-fedora-clang 1.0.2 331.65 OK
r-devel-linux-x86_64-fedora-gcc 1.0.2 335.23 OK
r-devel-windows-ix86+x86_64 1.0.2 25.00 172.00 197.00 OK
r-patched-linux-x86_64 1.0.2 7.35 423.08 430.43 OK
r-patched-osx-x86_64 1.0.2 WARN
r-patched-solaris-x86 1.0.2 277.70 NOTE
r-release-linux-x86_64 1.0.2 5.66 422.67 428.33 OK
r-release-windows-ix86+x86_64 1.0.2 23.00 157.00 180.00 OK
r-release-osx-x86_64 1.0.2 OK
r-oldrel-windows-ix86+x86_64 1.0.2 9.00 175.00 184.00 OK
r-oldrel-osx-x86_64 1.0.1 OK

Check Details

Version: 1.0.2
Check: package dependencies
Result: NOTE
    Packages suggested but not available for checking: 'treeio', 'ggtree'
Flavor: r-patched-osx-x86_64

Version: 1.0.2
Check: Rd cross-references
Result: NOTE
    Package unavailable to check Rd xrefs: ‘treeio’
Flavor: r-patched-osx-x86_64

Version: 1.0.2
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building ‘continuous.Rmd’ using rmarkdown
    Loading required package: sp
    Loading required package: viridisLite
    
    Attaching package: 'data.table'
    
    The following object is masked from 'package:raster':
    
     shift
    
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:data.table':
    
     between, first, last
    
    The following objects are masked from 'package:raster':
    
     intersect, select, union
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    dyld: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    Error: processing vignette 'continuous.Rmd' failed with diagnostics:
    pandoc document conversion failed with error 6
    --- failed re-building ‘continuous.Rmd’
    
    --- re-building ‘discrete.Rmd’ using rmarkdown
    Loading required package: viridisLite
    
    Attaching package: 'igraph'
    
    The following objects are masked from 'package:stats':
    
     decompose, spectrum
    
    The following object is masked from 'package:base':
    
     union
    
    Warning: Removed 3 rows containing missing values (geom_text).
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:igraph':
    
     as_data_frame, groups, union
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    dyld: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    Error: processing vignette 'discrete.Rmd' failed with diagnostics:
    pandoc document conversion failed with error 6
    --- failed re-building ‘discrete.Rmd’
    
    --- re-building ‘none.Rmd’ using rmarkdown
    dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    dyld: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    Error: processing vignette 'none.Rmd' failed with diagnostics:
    pandoc document conversion failed with error 6
    --- failed re-building ‘none.Rmd’
    
    --- re-building ‘nosoi.Rmd’ using rmarkdown
    Loading required package: viridisLite
    
    Attaching package: 'igraph'
    
    The following objects are masked from 'package:stats':
    
     decompose, spectrum
    
    The following object is masked from 'package:base':
    
     union
    
    dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    dyld: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    Error: processing vignette 'nosoi.Rmd' failed with diagnostics:
    pandoc document conversion failed with error 6
    --- failed re-building ‘nosoi.Rmd’
    
    --- re-building ‘output.Rmd’ using rmarkdown
    Loading required package: data.table
    Starting the simulation
    Initializing ... running ...
    Time: 10 (10% of maximum length). Hosts count: 13 (6% of maximum infected hosts).
    Time: 20 (20% of maximum length). Hosts count: 88 (44% of maximum infected hosts).
    Time: 30 (30% of maximum length). Hosts count: 120 (60% of maximum infected hosts).
    Time: 40 (40% of maximum length). Hosts count: 171 (86% of maximum infected hosts).
    done.
    The simulation has run for 46 units of time and a total of 204 hosts have been infected.
    `stat_bin()` using `bins = 30`. Pick better value with `binwidth`.
    Packages 'ape', 'tidytree' and 'treeio' are needed for transmission tree generation.
    Packages 'ggplot2' and 'ggtree' are needed for plotting this figure.
    Packages 'ape', 'tidytree' and 'treeio' are needed for transmission tree generation.
    Packages 'ape', 'tidytree' and 'treeio' are needed for transmission tree generation.
    Package 'ggtree' is needed for plotting this figure.
    Packages 'ape', 'tidytree' and 'treeio' are needed for transmission tree generation.
    Packages 'ape', 'tidytree' and 'treeio' are needed for transmission tree generation.
    Packages 'ape', 'tidytree', 'treeio' and 'ggtree' are needed for transmission tree generation.
    dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    dyld: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    Error: processing vignette 'output.Rmd' failed with diagnostics:
    pandoc document conversion failed with error 6
    --- failed re-building ‘output.Rmd’
    
    SUMMARY: processing the following files failed:
     ‘continuous.Rmd’ ‘discrete.Rmd’ ‘none.Rmd’ ‘nosoi.Rmd’ ‘output.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-patched-osx-x86_64

Version: 1.0.2
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘gifski’
Flavor: r-patched-solaris-x86