Last updated on 2020-04-25 01:53:09 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.2 | 6.65 | 326.45 | 333.10 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.0.2 | 5.65 | 541.03 | 546.68 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.0.2 | 331.65 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.0.2 | 335.23 | OK | |||
| r-devel-windows-ix86+x86_64 | 1.0.2 | 25.00 | 172.00 | 197.00 | OK | |
| r-patched-linux-x86_64 | 1.0.2 | 7.35 | 423.08 | 430.43 | OK | |
| r-patched-osx-x86_64 | 1.0.2 | WARN | ||||
| r-patched-solaris-x86 | 1.0.2 | 277.70 | NOTE | |||
| r-release-linux-x86_64 | 1.0.2 | 5.66 | 422.67 | 428.33 | OK | |
| r-release-windows-ix86+x86_64 | 1.0.2 | 23.00 | 157.00 | 180.00 | OK | |
| r-release-osx-x86_64 | 1.0.2 | OK | ||||
| r-oldrel-windows-ix86+x86_64 | 1.0.2 | 9.00 | 175.00 | 184.00 | OK | |
| r-oldrel-osx-x86_64 | 1.0.1 | OK |
Version: 1.0.2
Check: package dependencies
Result: NOTE
Packages suggested but not available for checking: 'treeio', 'ggtree'
Flavor: r-patched-osx-x86_64
Version: 1.0.2
Check: Rd cross-references
Result: NOTE
Package unavailable to check Rd xrefs: ‘treeio’
Flavor: r-patched-osx-x86_64
Version: 1.0.2
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
--- re-building ‘continuous.Rmd’ using rmarkdown
Loading required package: sp
Loading required package: viridisLite
Attaching package: 'data.table'
The following object is masked from 'package:raster':
shift
Attaching package: 'dplyr'
The following objects are masked from 'package:data.table':
between, first, last
The following objects are masked from 'package:raster':
intersect, select, union
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
Expected in: /usr/lib/libSystem.B.dylib
dyld: Symbol not found: ____chkstk_darwin
Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
Expected in: /usr/lib/libSystem.B.dylib
Error: processing vignette 'continuous.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘continuous.Rmd’
--- re-building ‘discrete.Rmd’ using rmarkdown
Loading required package: viridisLite
Attaching package: 'igraph'
The following objects are masked from 'package:stats':
decompose, spectrum
The following object is masked from 'package:base':
union
Warning: Removed 3 rows containing missing values (geom_text).
Attaching package: 'dplyr'
The following objects are masked from 'package:igraph':
as_data_frame, groups, union
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
Expected in: /usr/lib/libSystem.B.dylib
dyld: Symbol not found: ____chkstk_darwin
Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
Expected in: /usr/lib/libSystem.B.dylib
Error: processing vignette 'discrete.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘discrete.Rmd’
--- re-building ‘none.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
Expected in: /usr/lib/libSystem.B.dylib
dyld: Symbol not found: ____chkstk_darwin
Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
Expected in: /usr/lib/libSystem.B.dylib
Error: processing vignette 'none.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘none.Rmd’
--- re-building ‘nosoi.Rmd’ using rmarkdown
Loading required package: viridisLite
Attaching package: 'igraph'
The following objects are masked from 'package:stats':
decompose, spectrum
The following object is masked from 'package:base':
union
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
Expected in: /usr/lib/libSystem.B.dylib
dyld: Symbol not found: ____chkstk_darwin
Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
Expected in: /usr/lib/libSystem.B.dylib
Error: processing vignette 'nosoi.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘nosoi.Rmd’
--- re-building ‘output.Rmd’ using rmarkdown
Loading required package: data.table
Starting the simulation
Initializing ... running ...
Time: 10 (10% of maximum length). Hosts count: 13 (6% of maximum infected hosts).
Time: 20 (20% of maximum length). Hosts count: 88 (44% of maximum infected hosts).
Time: 30 (30% of maximum length). Hosts count: 120 (60% of maximum infected hosts).
Time: 40 (40% of maximum length). Hosts count: 171 (86% of maximum infected hosts).
done.
The simulation has run for 46 units of time and a total of 204 hosts have been infected.
`stat_bin()` using `bins = 30`. Pick better value with `binwidth`.
Packages 'ape', 'tidytree' and 'treeio' are needed for transmission tree generation.
Packages 'ggplot2' and 'ggtree' are needed for plotting this figure.
Packages 'ape', 'tidytree' and 'treeio' are needed for transmission tree generation.
Packages 'ape', 'tidytree' and 'treeio' are needed for transmission tree generation.
Package 'ggtree' is needed for plotting this figure.
Packages 'ape', 'tidytree' and 'treeio' are needed for transmission tree generation.
Packages 'ape', 'tidytree' and 'treeio' are needed for transmission tree generation.
Packages 'ape', 'tidytree', 'treeio' and 'ggtree' are needed for transmission tree generation.
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
Expected in: /usr/lib/libSystem.B.dylib
dyld: Symbol not found: ____chkstk_darwin
Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
Expected in: /usr/lib/libSystem.B.dylib
Error: processing vignette 'output.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘output.Rmd’
SUMMARY: processing the following files failed:
‘continuous.Rmd’ ‘discrete.Rmd’ ‘none.Rmd’ ‘nosoi.Rmd’ ‘output.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-patched-osx-x86_64
Version: 1.0.2
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘gifski’
Flavor: r-patched-solaris-x86