CRAN Package Check Results for Package nlrx

Last updated on 2020-04-25 01:53:09 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.4.1 6.69 90.71 97.40 OK
r-devel-linux-x86_64-debian-gcc 0.4.1 5.33 68.77 74.10 OK
r-devel-linux-x86_64-fedora-clang 0.4.1 117.49 OK
r-devel-linux-x86_64-fedora-gcc 0.4.1 118.19 OK
r-devel-windows-ix86+x86_64 0.4.1 26.00 115.00 141.00 OK
r-patched-linux-x86_64 0.4.1 7.30 86.59 93.89 OK
r-patched-osx-x86_64 0.4.1 ERROR
r-patched-solaris-x86 0.4.1 151.30 OK
r-release-linux-x86_64 0.4.1 5.95 79.61 85.56 OK
r-release-windows-ix86+x86_64 0.4.1 17.00 156.00 173.00 OK
r-release-osx-x86_64 0.4.1 OK
r-oldrel-windows-ix86+x86_64 0.4.1 9.00 105.00 114.00 OK
r-oldrel-osx-x86_64 0.4.1 OK

Check Details

Version: 0.4.1
Check: examples
Result: ERROR
    Running examples in ‘nlrx-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: nldoc
    > ### Title: Create NetLogo documentation
    > ### Aliases: nldoc
    >
    > ### ** Examples
    >
    >
    > # List model files (.nls subfiles are also supported)
    > modelfiles <- c("https://raw.githubusercontent.com/nldoc/nldoc_pg/master/WSP.nlogo",
    + "https://raw.githubusercontent.com/nldoc/nldoc_pg/master/WSP.nls")
    >
    > # Define output directory:
    > outdir <- tempdir() # adjust path to your needs
    >
    > # Create documentation:
    > nldoc(modelfiles = modelfiles,
    + infotab=TRUE,
    + gui=TRUE,
    + bs=TRUE,
    + outpath = outdir,
    + output_format = "html",
    + number_sections = TRUE,
    + theme = "cosmo",
    + date = date(),
    + toc = TRUE)
    /usr/local/bin/pandoc +RTS -K512m -RTS nldoc.utf8.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash+smart --output nldoc.html --email-obfuscation none --self-contained --standalone --section-divs --table-of-contents --toc-depth 3 --template /Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.0/rmarkdown/rmd/h/default.html --no-highlight --variable highlightjs=1 --number-sections --variable 'theme:cosmo' --include-in-header /Volumes/Temp/tmp/RtmpAdyJPI/rmarkdown-stre70d251199de.html --mathjax --variable 'mathjax-url:https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML' --lua-filter /Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.0/rmarkdown/rmd/lua/pagebreak.lua --lua-filter /Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.0/rmarkdown/rmd/lua/latex-div.lua
    dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    dyld: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    Error: pandoc document conversion failed with error 6
    Execution halted
Flavor: r-patched-osx-x86_64

Version: 0.4.1
Check: tests
Result: ERROR
     Running ‘testthat-class.R’ [1s/2s]
     Running ‘testthat-exe1.R’ [1s/1s]
     Running ‘testthat-exe2.R’ [1s/1s]
     Running ‘testthat-exe3.R’ [1s/1s]
     Running ‘testthat-nldoc.R’ [2s/2s]
    Running the tests in ‘tests/testthat-nldoc.R’ failed.
    Last 13 lines of output:
     ── 1. Error: nldoc (@test-nldoc.R#14) ─────────────────────────────────────────
     pandoc document conversion failed with error 6
     Backtrace:
     1. nlrx::nldoc(...)
     2. nlrx:::nldoc_write_nldoc(...)
     3. rmarkdown::render(mdfile)
     4. rmarkdown:::convert(output_file, run_citeproc)
     5. rmarkdown::pandoc_convert(...)
    
     ══ testthat results ═══════════════════════════════════════════════════════════
     [ OK: 0 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 1 ]
     1. Error: nldoc (@test-nldoc.R#14)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-patched-osx-x86_64

Version: 0.4.1
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building ‘abc.Rmd’ using rmarkdown
    dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    dyld: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    Error: processing vignette 'abc.Rmd' failed with diagnostics:
    pandoc document conversion failed with error 6
    --- failed re-building ‘abc.Rmd’
    
    --- re-building ‘furthernotes.Rmd’ using rmarkdown
    dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    dyld: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    Error: processing vignette 'furthernotes.Rmd' failed with diagnostics:
    pandoc document conversion failed with error 6
    --- failed re-building ‘furthernotes.Rmd’
    
    --- re-building ‘getstarted.Rmd’ using rmarkdown
    dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    dyld: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    Error: processing vignette 'getstarted.Rmd' failed with diagnostics:
    pandoc document conversion failed with error 6
    --- failed re-building ‘getstarted.Rmd’
    
    --- re-building ‘optimization.Rmd’ using rmarkdown
    dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    dyld: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    Error: processing vignette 'optimization.Rmd' failed with diagnostics:
    pandoc document conversion failed with error 6
    --- failed re-building ‘optimization.Rmd’
    
    --- re-building ‘sensitivity.Rmd’ using rmarkdown
    dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    dyld: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    Error: processing vignette 'sensitivity.Rmd' failed with diagnostics:
    pandoc document conversion failed with error 6
    --- failed re-building ‘sensitivity.Rmd’
    
    --- re-building ‘simdesign-examples.Rmd’ using rmarkdown
    dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    dyld: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    Error: processing vignette 'simdesign-examples.Rmd' failed with diagnostics:
    pandoc document conversion failed with error 6
    --- failed re-building ‘simdesign-examples.Rmd’
    
    SUMMARY: processing the following files failed:
     ‘abc.Rmd’ ‘furthernotes.Rmd’ ‘getstarted.Rmd’ ‘optimization.Rmd’
     ‘sensitivity.Rmd’ ‘simdesign-examples.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-patched-osx-x86_64