CRAN Package Check Results for Package glmmTMB

Last updated on 2020-04-25 01:53:03 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0.1 169.18 450.40 619.58 OK
r-devel-linux-x86_64-debian-gcc 1.0.1 152.52 356.17 508.69 OK
r-devel-linux-x86_64-fedora-clang 1.0.1 795.05 NOTE
r-devel-linux-x86_64-fedora-gcc 1.0.1 823.91 OK
r-devel-windows-ix86+x86_64 1.0.1 321.00 636.00 957.00 NOTE --no-vignettes
r-patched-linux-x86_64 1.0.1 149.68 467.54 617.22 OK
r-patched-osx-x86_64 1.0.1 WARN
r-patched-solaris-x86 1.0.1 1121.40 NOTE
r-release-linux-x86_64 1.0.1 146.18 444.35 590.53 OK
r-release-windows-ix86+x86_64 1.0.1 310.00 468.00 778.00 NOTE --no-vignettes
r-release-osx-x86_64 1.0.1 NOTE
r-oldrel-windows-ix86+x86_64 1.0.1 209.00 592.00 801.00 NOTE --no-vignettes
r-oldrel-osx-x86_64 1.0.1 NOTE

Check Details

Version: 1.0.1
Check: installed package size
Result: NOTE
     installed size is 49.2Mb
     sub-directories of 1Mb or more:
     doc 1.2Mb
     libs 45.6Mb
     test_data 1.2Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-patched-osx-x86_64, r-patched-solaris-x86, r-release-osx-x86_64, r-oldrel-osx-x86_64

Version: 1.0.1
Flags: --no-vignettes
Check: installed package size
Result: NOTE
     installed size is 25.3Mb
     sub-directories of 1Mb or more:
     doc 1.2Mb
     libs 21.7Mb
     test_data 1.2Mb
Flavors: r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.0.1
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building ‘covstruct.rmd’ using rmarkdown
    dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    dyld: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    Error: processing vignette 'covstruct.rmd' failed with diagnostics:
    pandoc document conversion failed with error 6
    --- failed re-building ‘covstruct.rmd’
    
    --- re-building ‘mcmc.rmd’ using rmarkdown
    dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    dyld: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    Error: processing vignette 'mcmc.rmd' failed with diagnostics:
    pandoc document conversion failed with error 6
    --- failed re-building ‘mcmc.rmd’
    
    --- re-building ‘miscEx.rmd’ using rmarkdown
    dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    dyld: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    Error: processing vignette 'miscEx.rmd' failed with diagnostics:
    pandoc document conversion failed with error 6
    --- failed re-building ‘miscEx.rmd’
    
    --- re-building ‘parallel.Rmd’ using rmarkdown
    dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    dyld: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    Error: processing vignette 'parallel.Rmd' failed with diagnostics:
    pandoc document conversion failed with error 6
    --- failed re-building ‘parallel.Rmd’
    
    --- re-building ‘sim.rmd’ using rmarkdown
    dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    dyld: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    Error: processing vignette 'sim.rmd' failed with diagnostics:
    pandoc document conversion failed with error 6
    --- failed re-building ‘sim.rmd’
    
    --- re-building ‘troubleshooting.rmd’ using rmarkdown
    dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    dyld: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    Error: processing vignette 'troubleshooting.rmd' failed with diagnostics:
    pandoc document conversion failed with error 6
    --- failed re-building ‘troubleshooting.rmd’
    
    --- re-building ‘glmmTMB.Rnw’ using knitr
    Loading required package: stats4
    Warning in qt((1 - level)/2, df) : NaNs produced
    Warning in max(ids, na.rm = TRUE) :
     no non-missing arguments to max; returning -Inf
    --- finished re-building ‘glmmTMB.Rnw’
    
    --- re-building ‘model_evaluation.Rnw’ using knitr
    Loading required package: carData
    lattice theme set by effectsTheme()
    See ?effectsTheme for details.
    Loading required package: mvtnorm
    Loading required package: survival
    Loading required package: TH.data
    Loading required package: MASS
    
    Attaching package: 'TH.data'
    
    The following object is masked from 'package:MASS':
    
     geyser
    
    
    Attaching package: 'broom.mixed'
    
    The following object is masked from 'package:broom':
    
     tidyMCMC
    
    Loading required package: ggplot2
    Version: 1.36.23
    Date: 2017-03-03
    Author: Philip Leifeld (University of Glasgow)
    
    Please cite the JSS article in your publications -- see citation("texreg").
    
    Attaching package: 'huxtable'
    
    The following objects are masked from 'package:xtable':
    
     align, align<-, caption, caption<-, label, label<-, sanitize
    
    The following object is masked from 'package:ggplot2':
    
     theme_grey
    
    --- finished re-building ‘model_evaluation.Rnw’
    
    SUMMARY: processing the following files failed:
     ‘covstruct.rmd’ ‘mcmc.rmd’ ‘miscEx.rmd’ ‘parallel.Rmd’ ‘sim.rmd’
     ‘troubleshooting.rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-patched-osx-x86_64