CRAN Package Check Results for Package genBart

Last updated on 2020-04-25 01:53:02 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0.1 130.86 386.45 517.31 OK
r-devel-linux-x86_64-debian-gcc 1.0.1 121.86 290.59 412.45 OK
r-devel-linux-x86_64-fedora-clang 1.0.1 589.13 WARN
r-devel-linux-x86_64-fedora-gcc 1.0.1 703.00 NOTE
r-devel-windows-ix86+x86_64 1.0.1 217.00 408.00 625.00 OK
r-patched-linux-x86_64 1.0.1 131.10 378.73 509.83 OK
r-patched-osx-x86_64 1.0.1 WARN
r-patched-solaris-x86 1.0.1 1162.60 NOTE
r-release-linux-x86_64 1.0.1 129.79 359.39 489.18 OK
r-release-windows-ix86+x86_64 1.0.1 222.00 381.00 603.00 OK
r-release-osx-x86_64 1.0.1 ERROR
r-oldrel-windows-ix86+x86_64 1.0.1 162.00 483.00 645.00 OK
r-oldrel-osx-x86_64 1.0.1 NOTE

Check Details

Version: 1.0.1
Check: package dependencies
Result: WARN
    Requires orphaned package: ‘clValid’
Flavor: r-devel-linux-x86_64-fedora-clang

Version: 1.0.1
Check: dependencies in R code
Result: NOTE
    Namespaces in Imports field not imported from:
     ‘NMF’ ‘RColorBrewer’ ‘VennDiagram’ ‘clValid’ ‘data.table’ ‘grid’
     ‘gtools’ ‘pca3d’ ‘rmarkdown’ ‘scales’ ‘shinydashboard’ ‘shinyjs’
     ‘statmod’ ‘stringr’
     All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-osx-x86_64, r-patched-solaris-x86, r-release-osx-x86_64, r-oldrel-osx-x86_64

Version: 1.0.1
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building ‘genbart-vignette.Rmd’ using rmarkdown
    Welcome to genBart! To get started, it is recommended to walk
    through the vignette. It can be accessed through browseVignettes("genBart").
    dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    dyld: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    Error: processing vignette 'genbart-vignette.Rmd' failed with diagnostics:
    pandoc document conversion failed with error 6
    --- failed re-building ‘genbart-vignette.Rmd’
    
    SUMMARY: processing the following file failed:
     ‘genbart-vignette.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-patched-osx-x86_64

Version: 1.0.1
Check: tests
Result: ERROR
     Running ‘testthat.R’ [9s/9s]
    Running the tests in ‘tests/testthat.R’ failed.
    Last 13 lines of output:
     [1] "clustering genes from baseline samples normalized to mean..."
     [1] "clustering genes from all samples normalized to mean..."
     [1] "clustering genes from all samples normalized to baseline..."
     [1] "clustering genes from baseline samples normalized to mean..."
     [1] "clustering genes from baseline samples normalized to controls..."
     [1] "clustering genes from all samples normalized to mean..."
     [1] "clustering genes from all samples normalized to controls..."
     [1] "clustering genes from all samples normalized to baseline..."
     ══ testthat results ═══════════════════════════════════════════════════════════
     [ OK: 134 | SKIPPED: 0 | WARNINGS: 1 | FAILED: 2 ]
     1. Error: genModelResults outputs correctly for one comparison (@test_genModelResults.R#64)
     2. Error: genModelResults outputs correctly for multiple comparisons (@test_genModelResults.R#85)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-release-osx-x86_64