CRAN Package Check Results for Package drtmle

Last updated on 2020-04-25 01:53:00 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0.5 12.92 344.33 357.25 OK
r-devel-linux-x86_64-debian-gcc 1.0.5 10.99 255.49 266.48 OK
r-devel-linux-x86_64-fedora-clang 1.0.5 408.40 OK
r-devel-linux-x86_64-fedora-gcc 1.0.5 413.78 OK
r-devel-windows-ix86+x86_64 1.0.5 40.00 335.00 375.00 OK
r-patched-linux-x86_64 1.0.5 13.56 332.08 345.64 OK
r-patched-osx-x86_64 1.0.5 WARN
r-patched-solaris-x86 1.0.5 533.60 OK
r-release-linux-x86_64 1.0.5 10.31 299.63 309.94 OK
r-release-windows-ix86+x86_64 1.0.5 37.00 307.00 344.00 OK
r-release-osx-x86_64 1.0.5 OK
r-oldrel-windows-ix86+x86_64 1.0.5 18.00 309.00 327.00 OK
r-oldrel-osx-x86_64 1.0.5 OK

Check Details

Version: 1.0.5
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building ‘using_drtmle.Rmd’ using rmarkdown
    drtmle: TMLE with doubly robust inference
    Version: 1.0.5
    Loading required package: nnls
    Super Learner
    Version: 2.0-26
    Package created on 2019-10-27
    
    Warning in method$computeCoef(Z = Z, Y = Y, libraryNames = libraryNames, :
     SL.step.interaction_All are duplicates of previous learners. Removing from super learner.
    Warning in method$computeCoef(Z = Z, Y = Y, libraryNames = libraryNames, :
     SL.step.interaction_All are duplicates of previous learners. Removing from super learner.
    Warning in method$computeCoef(Z = Z, Y = Y, libraryNames = libraryNames, :
     SL.step.interaction_All are duplicates of previous learners. Removing from super learner.
    Warning in method$computeCoef(Z = Z, Y = Y, libraryNames = libraryNames, :
     SL.step.interaction_All are duplicates of previous learners. Removing from super learner.
    Warning in method$computeCoef(Z = Z, Y = Y, libraryNames = libraryNames, :
     SL.step.interaction_All are duplicates of previous learners. Removing from super learner.
    Warning in method$computeCoef(Z = Z, Y = Y, libraryNames = libraryNames, :
     SL.step.interaction_All are duplicates of previous learners. Removing from super learner.
    Warning in method$computeCoef(Z = Z, Y = Y, libraryNames = libraryNames, :
     SL.step.interaction_All are duplicates of previous learners. Removing from super learner.
    Warning in method$computeCoef(Z = Z, Y = Y, libraryNames = libraryNames, :
     SL.step.interaction_All are duplicates of previous learners. Removing from super learner.
    Warning in method$computeCoef(Z = Z, Y = Y, libraryNames = libraryNames, :
     SL.step.interaction_All are duplicates of previous learners. Removing from super learner.
    Warning in method$computeCoef(Z = Z, Y = Y, libraryNames = libraryNames, :
     SL.step.interaction_All are duplicates of previous learners. Removing from super learner.
    Warning in predict.lm(object, newdata, se.fit, scale = 1, type = if (type == :
     prediction from a rank-deficient fit may be misleading
    Warning in predict.lm(object, newdata, se.fit, scale = 1, type = if (type == :
     prediction from a rank-deficient fit may be misleading
    Warning in predict.lm(object, newdata, se.fit, scale = 1, type = if (type == :
     prediction from a rank-deficient fit may be misleading
    Warning in predict.lm(object, newdata, se.fit, scale = 1, type = if (type == :
     prediction from a rank-deficient fit may be misleading
    Warning in predict.lm(object, newdata, se.fit, scale = 1, type = if (type == :
     prediction from a rank-deficient fit may be misleading
    Warning in predict.lm(object, newdata, se.fit, scale = 1, type = if (type == :
     prediction from a rank-deficient fit may be misleading
    Warning in predict.lm(object, newdata, se.fit, scale = 1, type = if (type == :
     prediction from a rank-deficient fit may be misleading
    Warning in predict.lm(object, newdata, se.fit, scale = 1, type = if (type == :
     prediction from a rank-deficient fit may be misleading
    Warning in predict.lm(object, newdata, se.fit, scale = 1, type = if (type == :
     prediction from a rank-deficient fit may be misleading
    Warning in predict.lm(object, newdata, se.fit, scale = 1, type = if (type == :
     prediction from a rank-deficient fit may be misleading
    Warning in predict.lm(object, newdata, se.fit, scale = 1, type = if (type == :
     prediction from a rank-deficient fit may be misleading
    Warning in predict.lm(object, newdata, se.fit, scale = 1, type = if (type == :
     prediction from a rank-deficient fit may be misleading
    Warning in predict.lm(object, newdata, se.fit, scale = 1, type = if (type == :
     prediction from a rank-deficient fit may be misleading
    Warning in predict.lm(object, newdata, se.fit, scale = 1, type = if (type == :
     prediction from a rank-deficient fit may be misleading
    Warning in predict.lm(object, newdata, se.fit, scale = 1, type = if (type == :
     prediction from a rank-deficient fit may be misleading
    Warning in predict.lm(object, newdata, se.fit, scale = 1, type = if (type == :
     prediction from a rank-deficient fit may be misleading
    Warning in predict.lm(object, newdata, se.fit, scale = 1, type = if (type == :
     prediction from a rank-deficient fit may be misleading
    Warning in predict.lm(object, newdata, se.fit, scale = 1, type = if (type == :
     prediction from a rank-deficient fit may be misleading
    Warning in predict.lm(object, newdata, se.fit, scale = 1, type = if (type == :
     prediction from a rank-deficient fit may be misleading
    Warning in predict.lm(object, newdata, se.fit, scale = 1, type = if (type == :
     prediction from a rank-deficient fit may be misleading
    Warning in predict.lm(object, newdata, se.fit, scale = 1, type = if (type == :
     prediction from a rank-deficient fit may be misleading
    Warning in predict.lm(object, newdata, se.fit, scale = 1, type = if (type == :
     prediction from a rank-deficient fit may be misleading
    Warning: Using formula(x) is deprecated when x is a character vector of length > 1.
     Consider formula(paste(x, collapse = " ")) instead.
    Warning: Using formula(x) is deprecated when x is a character vector of length > 1.
     Consider formula(paste(x, collapse = " ")) instead.
    Warning: Using formula(x) is deprecated when x is a character vector of length > 1.
     Consider formula(paste(x, collapse = " ")) instead.
    Warning: Using formula(x) is deprecated when x is a character vector of length > 1.
     Consider formula(paste(x, collapse = " ")) instead.
    Warning: Using formula(x) is deprecated when x is a character vector of length > 1.
     Consider formula(paste(x, collapse = " ")) instead.
    Warning: Using formula(x) is deprecated when x is a character vector of length > 1.
     Consider formula(paste(x, collapse = " ")) instead.
    Warning: Using formula(x) is deprecated when x is a character vector of length > 1.
     Consider formula(paste(x, collapse = " ")) instead.
    Warning: Using formula(x) is deprecated when x is a character vector of length > 1.
     Consider formula(paste(x, collapse = " ")) instead.
    Warning: Using formula(x) is deprecated when x is a character vector of length > 1.
     Consider formula(paste(x, collapse = " ")) instead.
    Warning: Using formula(x) is deprecated when x is a character vector of length > 1.
     Consider formula(paste(x, collapse = " ")) instead.
    Warning: Using formula(x) is deprecated when x is a character vector of length > 1.
     Consider formula(paste(x, collapse = " ")) instead.
    Warning: Using formula(x) is deprecated when x is a character vector of length > 1.
     Consider formula(paste(x, collapse = " ")) instead.
    Warning: glm.fit: fitted probabilities numerically 0 or 1 occurred
    Warning: glm.fit: fitted probabilities numerically 0 or 1 occurred
    dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    dyld: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    Error: processing vignette 'using_drtmle.Rmd' failed with diagnostics:
    pandoc document conversion failed with error 6
    --- failed re-building ‘using_drtmle.Rmd’
    
    SUMMARY: processing the following file failed:
     ‘using_drtmle.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-patched-osx-x86_64