CRAN Package Check Results for Package ddpcr

Last updated on 2020-04-25 01:52:59 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.14 7.37 123.63 131.00 OK
r-devel-linux-x86_64-debian-gcc 1.14 5.63 90.54 96.17 OK
r-devel-linux-x86_64-fedora-clang 1.14 153.34 OK
r-devel-linux-x86_64-fedora-gcc 1.14 157.79 OK
r-devel-windows-ix86+x86_64 1.14 24.00 145.00 169.00 OK
r-patched-linux-x86_64 1.14 7.77 119.46 127.23 OK
r-patched-osx-x86_64 1.14 WARN
r-patched-solaris-x86 1.14 223.80 NOTE
r-release-linux-x86_64 1.14 5.59 112.98 118.57 OK
r-release-windows-ix86+x86_64 1.14 19.00 191.00 210.00 OK
r-release-osx-x86_64 1.14 OK
r-oldrel-windows-ix86+x86_64 1.14 12.00 120.00 132.00 OK
r-oldrel-osx-x86_64 1.14 OK

Check Details

Version: 1.14
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building ‘algorithm.Rmd’ using rmarkdown
    dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    dyld: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    Error: processing vignette 'algorithm.Rmd' failed with diagnostics:
    pandoc document conversion failed with error 6
    --- failed re-building ‘algorithm.Rmd’
    
    --- re-building ‘extend.Rmd’ using rmarkdown
    dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    dyld: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    Error: processing vignette 'extend.Rmd' failed with diagnostics:
    pandoc document conversion failed with error 6
    --- failed re-building ‘extend.Rmd’
    
    --- re-building ‘overview.Rmd’ using rmarkdown
    
    Attaching package: 'ddpcr'
    
    The following object is masked from 'package:stats':
    
     step
    
    Reading data files into plate... DONE (0 seconds)
    Initializing plate of type `custom_thresholds`... DONE (0 seconds)
    Identifying outlier droplets... DONE (0 seconds)
    Classifying droplets... DONE (0 seconds)
    Analysis complete
    Reading data files into plate... DONE (0 seconds)
    Initializing plate of type `fam_positive_pnpp`... DONE (0 seconds)
    Identifying failed wells... DONE (0 seconds)
    Identifying outlier droplets... DONE (0 seconds)
    Identifying empty droplets... DONE (2 seconds)
    Classifying droplets... DONE (0 seconds)
    Reclassifying droplets... skipped (not enough wells with significant mutant clusters)
    Analysis complete
    Initializing plate of type `custom_thresholds`... DONE (0 seconds)
    Reading data files into plate... DONE (0 seconds)
    Initializing plate of type `custom_thresholds`... DONE (0 seconds)
    dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    dyld: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    Error: processing vignette 'overview.Rmd' failed with diagnostics:
    pandoc document conversion failed with error 6
    --- failed re-building ‘overview.Rmd’
    
    --- re-building ‘technical_details.Rmd’ using rmarkdown
    dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    dyld: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    Error: processing vignette 'technical_details.Rmd' failed with diagnostics:
    pandoc document conversion failed with error 6
    --- failed re-building ‘technical_details.Rmd’
    
    SUMMARY: processing the following files failed:
     ‘algorithm.Rmd’ ‘extend.Rmd’ ‘overview.Rmd’ ‘technical_details.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-patched-osx-x86_64

Version: 1.14
Check: installed package size
Result: NOTE
     installed size is 5.8Mb
     sub-directories of 1Mb or more:
     sample_data 3.6Mb
Flavor: r-patched-solaris-x86