CRAN Package Check Results for Package clustermole

Last updated on 2020-04-25 01:52:57 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0.1 33.55 304.83 338.38 OK
r-devel-linux-x86_64-debian-gcc 1.0.1 31.85 235.95 267.80 OK
r-devel-linux-x86_64-fedora-clang 1.0.1 427.52 OK
r-devel-linux-x86_64-fedora-gcc 1.0.1 419.64 OK
r-devel-windows-ix86+x86_64 1.0.1 96.00 278.00 374.00 OK
r-patched-linux-x86_64 1.0.1 32.74 291.89 324.63 OK
r-patched-osx-x86_64 1.0.1 WARN
r-patched-solaris-x86 1.0.1 624.30 OK
r-release-linux-x86_64 1.0.1 18.09 154.27 172.36 OK
r-release-windows-ix86+x86_64 1.0.1 59.00 252.00 311.00 OK
r-release-osx-x86_64 1.0.1 OK
r-oldrel-windows-ix86+x86_64 1.0.1 23.00 157.00 180.00 ERROR
r-oldrel-osx-x86_64 1.0.1 OK

Check Details

Version: 1.0.1
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building ‘clustermole-intro.Rmd’ using rmarkdown
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    dyld: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    Error: processing vignette 'clustermole-intro.Rmd' failed with diagnostics:
    pandoc document conversion failed with error 6
    --- failed re-building ‘clustermole-intro.Rmd’
    
    SUMMARY: processing the following file failed:
     ‘clustermole-intro.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-patched-osx-x86_64

Version: 1.0.1
Check: examples
Result: ERROR
    Running examples in 'clustermole-Ex.R' failed
    The error most likely occurred in:
    
    > ### Name: read_gmt
    > ### Title: Read a GMT file into a data frame
    > ### Aliases: read_gmt
    >
    > ### ** Examples
    >
    > gmt <- "http://software.broadinstitute.org/gsea/msigdb/supplemental/scsig.all.v1.0.symbols.gmt"
    > gmt_tbl <- read_gmt(gmt)
    Warning in file(con, "r") :
     InternetOpenUrl failed: 'Eine Umleitungsanforderung ändert eine nicht sichere in eine sichere Verbindung.'
    Error in file(con, "r") : cannot open the connection
    Calls: read_gmt -> strsplit -> readLines -> file
    Execution halted
Flavor: r-oldrel-windows-ix86+x86_64

Version: 1.0.1
Check: tests
Result: ERROR
     Running 'testthat.R' [16s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > library(testthat)
     > library(clustermole)
     >
     > test_check("clustermole")
     -- 1. Error: read_gmt() output (@test-functions.R#103) ------------------------
     cannot open the connection
     Backtrace:
     1. clustermole::read_gmt(file = "http://software.broadinstitute.org/gsea/msigdb/supplemental/scsig.all.v1.0.symbols.gmt")
     3. base::readLines(file)
     4. base::file(con, "r")
    
     == testthat results ===========================================================
     [ OK: 27 | SKIPPED: 0 | WARNINGS: 1 | FAILED: 1 ]
     1. Error: read_gmt() output (@test-functions.R#103)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-oldrel-windows-ix86+x86_64