CRAN Package Check Results for Package babette

Last updated on 2020-04-25 01:52:55 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.1.2 3.66 48.84 52.50 OK
r-devel-linux-x86_64-debian-gcc 2.1.2 2.97 39.24 42.21 OK
r-devel-linux-x86_64-fedora-clang 2.1.2 64.95 OK
r-devel-linux-x86_64-fedora-gcc 2.1.2 64.56 OK
r-devel-windows-ix86+x86_64 2.1.2 22.00 76.00 98.00 OK
r-patched-linux-x86_64 2.1.2 3.66 48.81 52.47 OK
r-patched-osx-x86_64 2.1.2 WARN
r-patched-solaris-x86 2.1.2 105.30 OK
r-release-linux-x86_64 2.1.2 2.66 45.52 48.18 OK
r-release-windows-ix86+x86_64 2.1.2 15.00 69.00 84.00 OK
r-release-osx-x86_64 2.1.2 OK
r-oldrel-windows-ix86+x86_64 2.1.2 6.00 81.00 87.00 OK
r-oldrel-osx-x86_64 2.1.2 ERROR

Check Details

Version: 2.1.2
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building ‘demo.Rmd’ using rmarkdown
    Loading required package: beautier
    Loading required package: beastier
    Loading required package: mauricer
    Loading required package: tracerer
    dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    dyld: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    Error: processing vignette 'demo.Rmd' failed with diagnostics:
    pandoc document conversion failed with error 6
    --- failed re-building ‘demo.Rmd’
    
    --- re-building ‘examples.Rmd’ using rmarkdown
    Loading required package: beautier
    Loading required package: beastier
    Loading required package: mauricer
    Loading required package: tracerer
    dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    dyld: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    Error: processing vignette 'examples.Rmd' failed with diagnostics:
    pandoc document conversion failed with error 6
    --- failed re-building ‘examples.Rmd’
    
    --- re-building ‘nested_sampling.Rmd’ using rmarkdown
    dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    dyld: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    Error: processing vignette 'nested_sampling.Rmd' failed with diagnostics:
    pandoc document conversion failed with error 6
    --- failed re-building ‘nested_sampling.Rmd’
    
    --- re-building ‘step_by_step.Rmd’ using rmarkdown
    Loading required package: beautier
    Loading required package: beastier
    Loading required package: mauricer
    Loading required package: tracerer
    dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    dyld: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    Error: processing vignette 'step_by_step.Rmd' failed with diagnostics:
    pandoc document conversion failed with error 6
    --- failed re-building ‘step_by_step.Rmd’
    
    --- re-building ‘tutorial.Rmd’ using rmarkdown
    dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    dyld: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    Error: processing vignette 'tutorial.Rmd' failed with diagnostics:
    pandoc document conversion failed with error 6
    --- failed re-building ‘tutorial.Rmd’
    
    SUMMARY: processing the following files failed:
     ‘demo.Rmd’ ‘examples.Rmd’ ‘nested_sampling.Rmd’ ‘step_by_step.Rmd’
     ‘tutorial.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-patched-osx-x86_64

Version: 2.1.2
Check: examples
Result: ERROR
    Running examples in ‘babette-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: prepare_file_creation
    > ### Title: Prepare for 'BEAST2' creating files
    > ### Aliases: prepare_file_creation
    >
    > ### ** Examples
    >
    > library(testthat)
    >
    > # For a test inference model, the files can be prepared
    > inference_model <- create_test_inference_model()
    > beast2_options <- create_beast2_options()
    > expect_silent(prepare_file_creation(inference_model, beast2_options))
    Error in prepare_file_creation(inference_model, beast2_options) :
     Cannot create file '/Users/urbanek/Library/Caches/beast2_8e795c04d241.xml.state'.
    Maybe no permissions to write there?
    Calls: expect_silent ... withCallingHandlers -> withVisible -> eval_bare -> prepare_file_creation
    Execution halted
Flavor: r-oldrel-osx-x86_64