CRAN Package Check Results for Package amt

Last updated on 2020-04-25 01:52:55 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.1.0 69.91 265.51 335.42 OK
r-devel-linux-x86_64-debian-gcc 0.1.0 46.21 196.43 242.64 OK
r-devel-linux-x86_64-fedora-clang 0.1.0 422.57 NOTE
r-devel-linux-x86_64-fedora-gcc 0.1.0 432.05 NOTE
r-devel-windows-ix86+x86_64 0.0.9 187.00 382.00 569.00 OK
r-patched-linux-x86_64 0.1.0 55.40 253.08 308.48 OK
r-patched-osx-x86_64 0.0.9 WARN
r-patched-solaris-x86 0.1.0 480.10 NOTE
r-release-linux-x86_64 0.0.9 54.20 226.30 280.50 OK
r-release-windows-ix86+x86_64 0.0.9 176.00 555.00 731.00 OK
r-release-osx-x86_64 0.1.0 ERROR
r-oldrel-windows-ix86+x86_64 0.1.0 92.00 297.00 389.00 OK
r-oldrel-osx-x86_64 0.0.8 ERROR

Check Details

Version: 0.1.0
Check: package dependencies
Result: NOTE
    Imports includes 25 non-default packages.
    Importing from so many packages makes the package vulnerable to any of
    them becoming unavailable. Move as many as possible to Suggests and
    use conditionally.
Flavor: r-devel-linux-x86_64-fedora-clang

Version: 0.1.0
Check: dependencies in R code
Result: NOTE
    Namespaces in Imports field not imported from:
     ‘Rcpp’ ‘magrittr’
     All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-solaris-x86, r-release-osx-x86_64

Version: 0.0.9
Check: dependencies in R code
Result: NOTE
    Namespaces in Imports field not imported from:
     ‘Rcpp’ ‘magrittr’
     All declared Imports should be used.
Flavor: r-patched-osx-x86_64

Version: 0.0.9
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building ‘faq.Rmd’ using rmarkdown
    Loading required package: sp
    
    Attaching package: 'lubridate'
    
    The following object is masked from 'package:base':
    
     date
    
    
    Attaching package: 'amt'
    
    The following objects are masked from 'package:raster':
    
     bbox, select
    
    The following object is masked from 'package:sp':
    
     bbox
    
    The following object is masked from 'package:stats':
    
     filter
    
    .t found, creating `track_xyt`.
    dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    dyld: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    Error: processing vignette 'faq.Rmd' failed with diagnostics:
    pandoc document conversion failed with error 6
    --- failed re-building ‘faq.Rmd’
    
    --- re-building ‘p1_getting_started.Rmd’ using rmarkdown
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    
    Attaching package: 'amt'
    
    The following object is masked from 'package:stats':
    
     filter
    
    .t missing, creating `track_xy`.
    dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    dyld: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    Error: processing vignette 'p1_getting_started.Rmd' failed with diagnostics:
    pandoc document conversion failed with error 6
    --- failed re-building ‘p1_getting_started.Rmd’
    
    --- re-building ‘p3_rsf.Rmd’ using rmarkdown
    
    Attaching package: 'amt'
    
    The following object is masked from 'package:stats':
    
     filter
    
    dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    dyld: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    Error: processing vignette 'p3_rsf.Rmd' failed with diagnostics:
    pandoc document conversion failed with error 6
    --- failed re-building ‘p3_rsf.Rmd’
    
    --- re-building ‘p4_SSF.Rmd’ using rmarkdown
    
    Attaching package: 'lubridate'
    
    The following object is masked from 'package:base':
    
     date
    
    Loading required package: sp
    
    Attaching package: 'amt'
    
    The following objects are masked from 'package:raster':
    
     bbox, select
    
    The following object is masked from 'package:sp':
    
     bbox
    
    The following object is masked from 'package:stats':
    
     filter
    
    dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    dyld: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    Error: processing vignette 'p4_SSF.Rmd' failed with diagnostics:
    pandoc document conversion failed with error 6
    --- failed re-building ‘p4_SSF.Rmd’
    
    --- re-building ‘p5_other_packages.Rmd’ using rmarkdown
    
    Attaching package: 'amt'
    
    The following object is masked from 'package:stats':
    
     filter
    
    Warning in as.telemetry.data.frame(data.frame(lon = x$x_, lat = x$y_, timestamp = x$t_)) :
     No MoveBank identification found. Assuming data corresponds to one indiviudal.
    Minimum sampling interval of 5.96 hours in unknown
    dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    dyld: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    Error: processing vignette 'p5_other_packages.Rmd' failed with diagnostics:
    pandoc document conversion failed with error 6
    --- failed re-building ‘p5_other_packages.Rmd’
    
    SUMMARY: processing the following files failed:
     ‘faq.Rmd’ ‘p1_getting_started.Rmd’ ‘p3_rsf.Rmd’ ‘p4_SSF.Rmd’
     ‘p5_other_packages.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-patched-osx-x86_64

Version: 0.1.0
Check: tests
Result: ERROR
     Running ‘tinytest.R’ [23s/23s]
    Running the tests in ‘tests/tinytest.R’ failed.
    Last 13 lines of output:
     Running test_track.R.................. 58 tests <1b>[0;32mOK<1b>[0m
     Running test_track.R.................. 59 tests <1b>[0;32mOK<1b>[0m
     Running test_track.R.................. 60 tests <1b>[0;32mOK<1b>[0m
     Running test_track.R.................. 61 tests <1b>[0;32mOK<1b>[0m
     Running test_track.R.................. 62 tests <1b>[0;32mOK<1b>[0m
     Running test_track.R.................. 63 tests <1b>[0;32mOK<1b>[0m
     Error: ----- FAILED[data]: test_random_steps.R<16--16>
     call| expect_true(atan2(x1[1, "y2_"] - x1[1, "y1_"], x1[1, "x2_"] -
     call| x1[1, "x1_"]) == a)
     diff| Expected TRUE, got FALSE
     ----- FAILED[data]: test_random_steps.R<28--28>
     call| expect_true(atan2(x1[1, "y2_"] - x1[1, "y1_"], x1[1, "x2_"] -
     call| x1[1, "x1_"]) == a)
     diff| Expected TRUE, got FALSE
     Execution halted
Flavor: r-release-osx-x86_64

Version: 0.0.8
Check: dependencies in R code
Result: NOTE
    Namespaces in Imports field not imported from:
     ‘Rcpp’ ‘magrittr’
     All declared Imports should be used.
Flavor: r-oldrel-osx-x86_64

Version: 0.0.8
Check: tests
Result: ERROR
     Running ‘testthat.R’ [208s/218s]
    Running the tests in ‘tests/testthat.R’ failed.
    Last 13 lines of output:
     The following object is masked from 'package:stats':
    
     filter
    
     >
     > test_check("amt")
     ── 1. Failure: akde works (@test.hr.R#20) ─────────────────────────────────────
     `mini_fisher %>% hr_akde(., model = fit_ctmm(., "bm"))` did not throw an error.
    
     ══ testthat results ═══════════════════════════════════════════════════════════
     [ OK: 76 | SKIPPED: 0 | WARNINGS: 7 | FAILED: 1 ]
     1. Failure: akde works (@test.hr.R#20)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-oldrel-osx-x86_64