CRAN Package Check Results for Package SyNet

Last updated on 2020-04-25 01:53:20 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.0 10.65 58.49 69.14 NOTE
r-devel-linux-x86_64-debian-gcc 2.0 8.01 45.00 53.01 NOTE
r-devel-linux-x86_64-fedora-clang 2.0 84.83 NOTE
r-devel-linux-x86_64-fedora-gcc 2.0 83.68 NOTE
r-devel-windows-ix86+x86_64 2.0 15.00 58.00 73.00 NOTE
r-patched-linux-x86_64 2.0 9.93 59.59 69.52 NOTE
r-patched-osx-x86_64 2.0 NOTE
r-patched-solaris-x86 2.0 117.70 NOTE
r-release-linux-x86_64 2.0 8.87 53.89 62.76 NOTE
r-release-windows-ix86+x86_64 2.0 11.00 71.00 82.00 NOTE
r-release-osx-x86_64 2.0 NOTE
r-oldrel-windows-ix86+x86_64 2.0 9.00 54.00 63.00 NOTE
r-oldrel-osx-x86_64 2.0 NOTE

Check Details

Version: 2.0
Check: top-level files
Result: NOTE
    Non-standard file/directory found at top level:
     'doc'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 2.0
Check: dependencies in R code
Result: NOTE
    'library' or 'require' calls to packages already attached by Depends:
     'tcltk' 'tkrplot'
     Please remove these calls from your code.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-osx-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 2.0
Check: R code for possible problems
Result: NOTE
    cleavogram : locategr: no visible global function definition for 'is'
    cleavogram : locatesp: no visible global function definition for 'is'
    cleavogram : locatesp: no visible global function definition for 'tail'
    cleavogram : ya: no visible global function definition for 'par'
    cleavogram : ya: no visible global function definition for 'plot.new'
    cleavogram : ya: no visible global function definition for 'is'
    cleavogram : ya: no visible global function definition for
     'plot.window'
    cleavogram : ya: no visible binding for global variable 'tail'
    cleavogram : ya: no visible global function definition for 'segments'
    cleavogram : ya: no visible global function definition for 'text'
    cleavogram : ya: no visible global function definition for 'points'
    cleavogram : ya: no visible global function definition for 'lines'
    cleavogram : ya.small: no visible global function definition for 'par'
    cleavogram : ya.small: no visible global function definition for
     'plot.new'
    cleavogram : ya.small: no visible global function definition for 'is'
    cleavogram : ya.small: no visible global function definition for
     'plot.window'
    cleavogram : ya.small: no visible global function definition for
     'abline'
    cleavogram : ya.small: no visible global function definition for 'rect'
    cleavogram : ya.small: no visible global function definition for 'gray'
    cleavogram : ya.small: no visible global function definition for
     'points'
    cleavogram : ya.small: no visible global function definition for
     'segments'
    cleavogram : ya.small: no visible binding for global variable 'tail'
    cleavogram : ya.small: no visible global function definition for
     'lines'
    cleavogram : savecleavogram : savefic: no visible global function
     definition for 'postscript'
    cleavogram : savecleavogram : savefic: no visible global function
     definition for 'pdf'
    cleavogram : savecleavogram : savefic: no visible global function
     definition for 'jpeg'
    cleavogram : savecleavogram : savefic: no visible global function
     definition for 'dev.off'
    cleavogram : flatpartition: no visible global function definition for
     'is'
    cleavogram : loadbranch: no visible global function definition for 'is'
    cleavogram : loadbranch: no visible global function definition for
     'gray'
    cleavogram : loadbranch : drawmap: no visible global function
     definition for 'par'
    cleavogram : loadbranch : drawmap: no visible global function
     definition for 'plot.new'
    cleavogram : loadbranch : drawmap: no visible global function
     definition for 'abline'
    cleavogram : loadbranch : drawmap: no visible global function
     definition for 'rect'
    cleavogram : loadbranch : drawmap: no visible global function
     definition for 'points'
    cleavogram : showresult: no visible global function definition for 'is'
    cleavogram : loadcombo: no visible global function definition for 'is'
    cleavogram : <anonymous>: no visible global function definition for
     'is'
    creategrid : drawgrid: no visible global function definition for 'par'
    creategrid : drawgrid: no visible global function definition for
     'plot.new'
    creategrid : drawgrid: no visible global function definition for
     'points'
    creategrid : drawgrid: no visible global function definition for
     'abline'
    creategrid : drawrich: no visible global function definition for 'par'
    creategrid : drawrich: no visible global function definition for
     'plot.new'
    creategrid : drawrich: no visible global function definition for 'rect'
    creategrid : drawrich: no visible global function definition for 'gray'
    creategrid : drawrich: no visible global function definition for
     'abline'
    creategrid : constructpdf: no visible global function definition for
     'pdf'
    creategrid : constructpdf: no visible global function definition for
     'text'
    creategrid : constructpdf: no visible global function definition for
     'dev.off'
    dotinfer: no visible global function definition for 'hclust'
    dotinfer: no visible global function definition for 'as.dist'
    dotinfer : ChangeMatrix: no visible global function definition for
     'hclust'
    dotinfer : ChangeMatrix: no visible global function definition for
     'as.dist'
    dotinfer : dendroplot: no visible global function definition for 'par'
    dotinfer : dendroplot: no visible global function definition for
     'segments'
    dotinfer : dendroplot: no visible global function definition for
     'abline'
    dotinfer : dnplot: no visible global function definition for 'par'
    dotinfer : dnplot: no visible global function definition for 'gray'
    dotinfer : dnplot: no visible global function definition for 'mtext'
    dotinfer : dnplot: no visible global function definition for 'points'
    dotinfer : dnplot: no visible global function definition for 'segments'
    dotinfer : replot: no visible global function definition for 'par'
    dotinfer : replot: no visible global function definition for 'density'
    dotinfer : replot: no visible global function definition for 'points'
    dotinfer : replot: no visible global function definition for 'mtext'
    dotinfer : replot: no visible global function definition for 'polygon'
    dotinfer : replot: no visible global function definition for 'tail'
    dotinfer : replot: no visible global function definition for 'abline'
    dotinfer : plotintensity : plotmtx: no visible global function
     definition for 'plot.new'
    dotinfer : plotintensity : plotmtx: no visible global function
     definition for 'par'
    dotinfer : plotintensity : plotmtx: no visible global function
     definition for 'plot.window'
    dotinfer : plotintensity : plotmtx: no visible global function
     definition for 'gray'
    dotinfer : plotintensity : plotmtx: no visible global function
     definition for 'rect'
    dotinfer : plotintensity : plotmtx: no visible global function
     definition for 'pdf'
    dotinfer : plotintensity : plotmtx: no visible global function
     definition for 'dev.off'
    dotinfer : shownetwork: no visible global function definition for
     'gray'
    dotinfer : shownetwork : <anonymous>: no visible global function
     definition for 'gray'
    gridinfer: no visible global function definition for 'read.table'
    gridinfer: no visible global function definition for 'dist'
    nam: no visible global function definition for 'flush.console'
    outgis: no visible global function definition for 'write.table'
    partitionindex: no visible global function definition for 'runif'
    partitionindex: no visible global function definition for 'hist'
    partitionindex: no visible global function definition for 'abline'
    partitionindex: no visible global function definition for 'fivenum'
    pointDemo : drawing: no visible global function definition for 'rect'
    pointDemo : drawing: no visible global function definition for 'text'
    pointDemo : drawing: no visible global function definition for
     'locator'
    pointDemo : movept: no visible global function definition for 'par'
    pointDemo : movept: no visible global function definition for 'rect'
    pointDemo : movept: no visible global function definition for 'gray'
    pointDemo : movept: no visible global function definition for 'text'
    pointDemo : movept: no visible global function definition for 'points'
    pointDemo : movept: no visible global function definition for 'dist'
    pointDemo : movept: no visible global function definition for 'mtext'
    pointDemo : rotate: no visible global function definition for 'par'
    pointDemo : rotate: no visible global function definition for 'rect'
    pointDemo : rotate: no visible global function definition for 'gray'
    pointDemo : rotate: no visible global function definition for 'text'
    pointDemo : rotate: no visible global function definition for 'points'
    pointDemo : rotate: no visible global function definition for 'dist'
    pointDemo : rotate: no visible global function definition for 'mtext'
    pointDemo : refresh: no visible global function definition for 'par'
    pointDemo : refresh: no visible global function definition for 'mtext'
    pointDemo : refresh: no visible global function definition for 'dist'
    procdnpoint: no visible global function definition for 'dist'
    stablecouple: no visible global function definition for 'median'
    stablecouple : kfast: no visible global function definition for
     'kmeans'
    stablecouple: no visible binding for global variable 'quantile'
    viewsp : loadpartition: no visible global function definition for 'is'
    viewsp : drawmap: no visible global function definition for 'par'
    viewsp : drawmap: no visible global function definition for 'plot.new'
    viewsp : drawmap: no visible global function definition for 'abline'
    viewsp : drawmap: no visible global function definition for 'rect'
    viewsp : drawmap: no visible global function definition for 'gray'
    viewsp : drawmap: no visible global function definition for 'points'
    Undefined global functions or variables:
     abline as.dist density dev.off dist fivenum flush.console gray hclust
     hist is jpeg kmeans lines locator median mtext par pdf plot.new
     plot.window points polygon postscript quantile read.table rect runif
     segments tail text write.table
    Consider adding
     importFrom("grDevices", "dev.off", "gray", "jpeg", "pdf", "postscript")
     importFrom("graphics", "abline", "hist", "lines", "locator", "mtext",
     "par", "plot.new", "plot.window", "points", "polygon",
     "rect", "segments", "text")
     importFrom("methods", "is")
     importFrom("stats", "as.dist", "density", "dist", "fivenum", "hclust",
     "kmeans", "median", "quantile", "runif")
     importFrom("utils", "flush.console", "read.table", "tail",
     "write.table")
    to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
    contains 'methods').
    
    Found the following assignments to the global environment:
    File 'SyNet/R/cleavogram.r':
     assign(tclvalue(outpartition), rslt, pos = 1)
    File 'SyNet/R/creategrid.r':
     assign(ReturnVal, outobj, envir = .GlobalEnv)
    File 'SyNet/R/dotinfer.r':
     assign(tclvalue(outputname), out, envir = .GlobalEnv)
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-patched-linux-x86_64

Version: 2.0
Check: Rd line widths
Result: NOTE
    Rd file 'acshgral.rd':
     \examples lines wider than 100 characters:
     #Display relationships into a parenthetical notation. You can track the indices of the species in the
    
    Rd file 'gridinfer.rd':
     \examples lines wider than 100 characters:
     #are nested inside it. In a network analysis this kind of element will behave as intermediary node.
    
    Rd file 'reweight.rd':
     \examples lines wider than 100 characters:
     plot(unlist(ej),unlist(reweight(ej)), xlab = "Input matrix", ylab = "Reweighted matrix", main = "First reweighting")
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64

Version: 2.0
Check: R code for possible problems
Result: NOTE
    cleavogram : locategr: no visible global function definition for ‘is’
    cleavogram : locatesp: no visible global function definition for ‘is’
    cleavogram : locatesp: no visible global function definition for ‘tail’
    cleavogram : ya: no visible global function definition for ‘par’
    cleavogram : ya: no visible global function definition for ‘plot.new’
    cleavogram : ya: no visible global function definition for ‘is’
    cleavogram : ya: no visible global function definition for
     ‘plot.window’
    cleavogram : ya: no visible binding for global variable ‘tail’
    cleavogram : ya: no visible global function definition for ‘segments’
    cleavogram : ya: no visible global function definition for ‘text’
    cleavogram : ya: no visible global function definition for ‘points’
    cleavogram : ya: no visible global function definition for ‘lines’
    cleavogram : ya.small: no visible global function definition for ‘par’
    cleavogram : ya.small: no visible global function definition for
     ‘plot.new’
    cleavogram : ya.small: no visible global function definition for ‘is’
    cleavogram : ya.small: no visible global function definition for
     ‘plot.window’
    cleavogram : ya.small: no visible global function definition for
     ‘abline’
    cleavogram : ya.small: no visible global function definition for ‘rect’
    cleavogram : ya.small: no visible global function definition for ‘gray’
    cleavogram : ya.small: no visible global function definition for
     ‘points’
    cleavogram : ya.small: no visible global function definition for
     ‘segments’
    cleavogram : ya.small: no visible binding for global variable ‘tail’
    cleavogram : ya.small: no visible global function definition for
     ‘lines’
    cleavogram : savecleavogram : savefic: no visible global function
     definition for ‘postscript’
    cleavogram : savecleavogram : savefic: no visible global function
     definition for ‘pdf’
    cleavogram : savecleavogram : savefic: no visible global function
     definition for ‘jpeg’
    cleavogram : savecleavogram : savefic: no visible global function
     definition for ‘dev.off’
    cleavogram : flatpartition: no visible global function definition for
     ‘is’
    cleavogram : loadbranch: no visible global function definition for ‘is’
    cleavogram : loadbranch: no visible global function definition for
     ‘gray’
    cleavogram : loadbranch : drawmap: no visible global function
     definition for ‘par’
    cleavogram : loadbranch : drawmap: no visible global function
     definition for ‘plot.new’
    cleavogram : loadbranch : drawmap: no visible global function
     definition for ‘abline’
    cleavogram : loadbranch : drawmap: no visible global function
     definition for ‘rect’
    cleavogram : loadbranch : drawmap: no visible global function
     definition for ‘points’
    cleavogram : showresult: no visible global function definition for ‘is’
    cleavogram : loadcombo: no visible global function definition for ‘is’
    cleavogram : <anonymous>: no visible global function definition for
     ‘is’
    creategrid : drawgrid: no visible global function definition for ‘par’
    creategrid : drawgrid: no visible global function definition for
     ‘plot.new’
    creategrid : drawgrid: no visible global function definition for
     ‘points’
    creategrid : drawgrid: no visible global function definition for
     ‘abline’
    creategrid : drawrich: no visible global function definition for ‘par’
    creategrid : drawrich: no visible global function definition for
     ‘plot.new’
    creategrid : drawrich: no visible global function definition for ‘rect’
    creategrid : drawrich: no visible global function definition for ‘gray’
    creategrid : drawrich: no visible global function definition for
     ‘abline’
    creategrid : constructpdf: no visible global function definition for
     ‘pdf’
    creategrid : constructpdf: no visible global function definition for
     ‘text’
    creategrid : constructpdf: no visible global function definition for
     ‘dev.off’
    dotinfer: no visible global function definition for ‘hclust’
    dotinfer: no visible global function definition for ‘as.dist’
    dotinfer : ChangeMatrix: no visible global function definition for
     ‘hclust’
    dotinfer : ChangeMatrix: no visible global function definition for
     ‘as.dist’
    dotinfer : dendroplot: no visible global function definition for ‘par’
    dotinfer : dendroplot: no visible global function definition for
     ‘segments’
    dotinfer : dendroplot: no visible global function definition for
     ‘abline’
    dotinfer : dnplot: no visible global function definition for ‘par’
    dotinfer : dnplot: no visible global function definition for ‘gray’
    dotinfer : dnplot: no visible global function definition for ‘mtext’
    dotinfer : dnplot: no visible global function definition for ‘points’
    dotinfer : dnplot: no visible global function definition for ‘segments’
    dotinfer : replot: no visible global function definition for ‘par’
    dotinfer : replot: no visible global function definition for ‘density’
    dotinfer : replot: no visible global function definition for ‘points’
    dotinfer : replot: no visible global function definition for ‘mtext’
    dotinfer : replot: no visible global function definition for ‘polygon’
    dotinfer : replot: no visible global function definition for ‘tail’
    dotinfer : replot: no visible global function definition for ‘abline’
    dotinfer : plotintensity : plotmtx: no visible global function
     definition for ‘plot.new’
    dotinfer : plotintensity : plotmtx: no visible global function
     definition for ‘par’
    dotinfer : plotintensity : plotmtx: no visible global function
     definition for ‘plot.window’
    dotinfer : plotintensity : plotmtx: no visible global function
     definition for ‘gray’
    dotinfer : plotintensity : plotmtx: no visible global function
     definition for ‘rect’
    dotinfer : plotintensity : plotmtx: no visible global function
     definition for ‘pdf’
    dotinfer : plotintensity : plotmtx: no visible global function
     definition for ‘dev.off’
    dotinfer : shownetwork: no visible global function definition for
     ‘gray’
    dotinfer : shownetwork : <anonymous>: no visible global function
     definition for ‘gray’
    gridinfer: no visible global function definition for ‘read.table’
    gridinfer: no visible global function definition for ‘dist’
    nam: no visible global function definition for ‘flush.console’
    outgis: no visible global function definition for ‘write.table’
    partitionindex: no visible global function definition for ‘runif’
    partitionindex: no visible global function definition for ‘hist’
    partitionindex: no visible global function definition for ‘abline’
    partitionindex: no visible global function definition for ‘fivenum’
    pointDemo : drawing: no visible global function definition for ‘rect’
    pointDemo : drawing: no visible global function definition for ‘text’
    pointDemo : drawing: no visible global function definition for
     ‘locator’
    pointDemo : movept: no visible global function definition for ‘par’
    pointDemo : movept: no visible global function definition for ‘rect’
    pointDemo : movept: no visible global function definition for ‘gray’
    pointDemo : movept: no visible global function definition for ‘text’
    pointDemo : movept: no visible global function definition for ‘points’
    pointDemo : movept: no visible global function definition for ‘dist’
    pointDemo : movept: no visible global function definition for ‘mtext’
    pointDemo : rotate: no visible global function definition for ‘par’
    pointDemo : rotate: no visible global function definition for ‘rect’
    pointDemo : rotate: no visible global function definition for ‘gray’
    pointDemo : rotate: no visible global function definition for ‘text’
    pointDemo : rotate: no visible global function definition for ‘points’
    pointDemo : rotate: no visible global function definition for ‘dist’
    pointDemo : rotate: no visible global function definition for ‘mtext’
    pointDemo : refresh: no visible global function definition for ‘par’
    pointDemo : refresh: no visible global function definition for ‘mtext’
    pointDemo : refresh: no visible global function definition for ‘dist’
    procdnpoint: no visible global function definition for ‘dist’
    stablecouple: no visible global function definition for ‘median’
    stablecouple : kfast: no visible global function definition for
     ‘kmeans’
    stablecouple: no visible binding for global variable ‘quantile’
    viewsp : loadpartition: no visible global function definition for ‘is’
    viewsp : drawmap: no visible global function definition for ‘par’
    viewsp : drawmap: no visible global function definition for ‘plot.new’
    viewsp : drawmap: no visible global function definition for ‘abline’
    viewsp : drawmap: no visible global function definition for ‘rect’
    viewsp : drawmap: no visible global function definition for ‘gray’
    viewsp : drawmap: no visible global function definition for ‘points’
    Undefined global functions or variables:
     abline as.dist density dev.off dist fivenum flush.console gray hclust
     hist is jpeg kmeans lines locator median mtext par pdf plot.new
     plot.window points polygon postscript quantile read.table rect runif
     segments tail text write.table
    Consider adding
     importFrom("grDevices", "dev.off", "gray", "jpeg", "pdf", "postscript")
     importFrom("graphics", "abline", "hist", "lines", "locator", "mtext",
     "par", "plot.new", "plot.window", "points", "polygon",
     "rect", "segments", "text")
     importFrom("methods", "is")
     importFrom("stats", "as.dist", "density", "dist", "fivenum", "hclust",
     "kmeans", "median", "quantile", "runif")
     importFrom("utils", "flush.console", "read.table", "tail",
     "write.table")
    to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
    contains 'methods').
Flavors: r-devel-linux-x86_64-fedora-gcc, r-patched-osx-x86_64, r-patched-solaris-x86

Version: 2.0
Check: R code for possible problems
Result: NOTE
    cleavogram : locategr: no visible global function definition for 'is'
    cleavogram : locatesp: no visible global function definition for 'is'
    cleavogram : locatesp: no visible global function definition for 'tail'
    cleavogram : ya: no visible global function definition for 'par'
    cleavogram : ya: no visible global function definition for 'plot.new'
    cleavogram : ya: no visible global function definition for 'is'
    cleavogram : ya: no visible global function definition for
     'plot.window'
    cleavogram : ya: no visible binding for global variable 'tail'
    cleavogram : ya: no visible global function definition for 'segments'
    cleavogram : ya: no visible global function definition for 'text'
    cleavogram : ya: no visible global function definition for 'points'
    cleavogram : ya: no visible global function definition for 'lines'
    cleavogram : ya.small: no visible global function definition for 'par'
    cleavogram : ya.small: no visible global function definition for
     'plot.new'
    cleavogram : ya.small: no visible global function definition for 'is'
    cleavogram : ya.small: no visible global function definition for
     'plot.window'
    cleavogram : ya.small: no visible global function definition for
     'abline'
    cleavogram : ya.small: no visible global function definition for 'rect'
    cleavogram : ya.small: no visible global function definition for 'gray'
    cleavogram : ya.small: no visible global function definition for
     'points'
    cleavogram : ya.small: no visible global function definition for
     'segments'
    cleavogram : ya.small: no visible binding for global variable 'tail'
    cleavogram : ya.small: no visible global function definition for
     'lines'
    cleavogram : savecleavogram : savefic: no visible global function
     definition for 'postscript'
    cleavogram : savecleavogram : savefic: no visible global function
     definition for 'pdf'
    cleavogram : savecleavogram : savefic: no visible global function
     definition for 'jpeg'
    cleavogram : savecleavogram : savefic: no visible global function
     definition for 'dev.off'
    cleavogram : flatpartition: no visible global function definition for
     'is'
    cleavogram : loadbranch: no visible global function definition for 'is'
    cleavogram : loadbranch: no visible global function definition for
     'gray'
    cleavogram : loadbranch : drawmap: no visible global function
     definition for 'par'
    cleavogram : loadbranch : drawmap: no visible global function
     definition for 'plot.new'
    cleavogram : loadbranch : drawmap: no visible global function
     definition for 'abline'
    cleavogram : loadbranch : drawmap: no visible global function
     definition for 'rect'
    cleavogram : loadbranch : drawmap: no visible global function
     definition for 'points'
    cleavogram : showresult: no visible global function definition for 'is'
    cleavogram : loadcombo: no visible global function definition for 'is'
    cleavogram : <anonymous>: no visible global function definition for
     'is'
    creategrid : drawgrid: no visible global function definition for 'par'
    creategrid : drawgrid: no visible global function definition for
     'plot.new'
    creategrid : drawgrid: no visible global function definition for
     'points'
    creategrid : drawgrid: no visible global function definition for
     'abline'
    creategrid : drawrich: no visible global function definition for 'par'
    creategrid : drawrich: no visible global function definition for
     'plot.new'
    creategrid : drawrich: no visible global function definition for 'rect'
    creategrid : drawrich: no visible global function definition for 'gray'
    creategrid : drawrich: no visible global function definition for
     'abline'
    creategrid : constructpdf: no visible global function definition for
     'pdf'
    creategrid : constructpdf: no visible global function definition for
     'text'
    creategrid : constructpdf: no visible global function definition for
     'dev.off'
    dotinfer: no visible global function definition for 'hclust'
    dotinfer: no visible global function definition for 'as.dist'
    dotinfer : ChangeMatrix: no visible global function definition for
     'hclust'
    dotinfer : ChangeMatrix: no visible global function definition for
     'as.dist'
    dotinfer : dendroplot: no visible global function definition for 'par'
    dotinfer : dendroplot: no visible global function definition for
     'segments'
    dotinfer : dendroplot: no visible global function definition for
     'abline'
    dotinfer : dnplot: no visible global function definition for 'par'
    dotinfer : dnplot: no visible global function definition for 'gray'
    dotinfer : dnplot: no visible global function definition for 'mtext'
    dotinfer : dnplot: no visible global function definition for 'points'
    dotinfer : dnplot: no visible global function definition for 'segments'
    dotinfer : replot: no visible global function definition for 'par'
    dotinfer : replot: no visible global function definition for 'density'
    dotinfer : replot: no visible global function definition for 'points'
    dotinfer : replot: no visible global function definition for 'mtext'
    dotinfer : replot: no visible global function definition for 'polygon'
    dotinfer : replot: no visible global function definition for 'tail'
    dotinfer : replot: no visible global function definition for 'abline'
    dotinfer : plotintensity : plotmtx: no visible global function
     definition for 'plot.new'
    dotinfer : plotintensity : plotmtx: no visible global function
     definition for 'par'
    dotinfer : plotintensity : plotmtx: no visible global function
     definition for 'plot.window'
    dotinfer : plotintensity : plotmtx: no visible global function
     definition for 'gray'
    dotinfer : plotintensity : plotmtx: no visible global function
     definition for 'rect'
    dotinfer : plotintensity : plotmtx: no visible global function
     definition for 'pdf'
    dotinfer : plotintensity : plotmtx: no visible global function
     definition for 'dev.off'
    dotinfer : shownetwork: no visible global function definition for
     'gray'
    dotinfer : shownetwork : <anonymous>: no visible global function
     definition for 'gray'
    gridinfer: no visible global function definition for 'read.table'
    gridinfer: no visible global function definition for 'dist'
    nam: no visible global function definition for 'flush.console'
    outgis: no visible global function definition for 'write.table'
    partitionindex: no visible global function definition for 'runif'
    partitionindex: no visible global function definition for 'hist'
    partitionindex: no visible global function definition for 'abline'
    partitionindex: no visible global function definition for 'fivenum'
    pointDemo : drawing: no visible global function definition for 'rect'
    pointDemo : drawing: no visible global function definition for 'text'
    pointDemo : drawing: no visible global function definition for
     'locator'
    pointDemo : movept: no visible global function definition for 'par'
    pointDemo : movept: no visible global function definition for 'rect'
    pointDemo : movept: no visible global function definition for 'gray'
    pointDemo : movept: no visible global function definition for 'text'
    pointDemo : movept: no visible global function definition for 'points'
    pointDemo : movept: no visible global function definition for 'dist'
    pointDemo : movept: no visible global function definition for 'mtext'
    pointDemo : rotate: no visible global function definition for 'par'
    pointDemo : rotate: no visible global function definition for 'rect'
    pointDemo : rotate: no visible global function definition for 'gray'
    pointDemo : rotate: no visible global function definition for 'text'
    pointDemo : rotate: no visible global function definition for 'points'
    pointDemo : rotate: no visible global function definition for 'dist'
    pointDemo : rotate: no visible global function definition for 'mtext'
    pointDemo : refresh: no visible global function definition for 'par'
    pointDemo : refresh: no visible global function definition for 'mtext'
    pointDemo : refresh: no visible global function definition for 'dist'
    procdnpoint: no visible global function definition for 'dist'
    read.coord: no visible global function definition for 'choose.files'
    read.coord: no visible binding for global variable 'Filters'
    stablecouple: no visible global function definition for 'median'
    stablecouple : kfast: no visible global function definition for
     'kmeans'
    stablecouple: no visible binding for global variable 'quantile'
    viewsp : loadpartition: no visible global function definition for 'is'
    viewsp : drawmap: no visible global function definition for 'par'
    viewsp : drawmap: no visible global function definition for 'plot.new'
    viewsp : drawmap: no visible global function definition for 'abline'
    viewsp : drawmap: no visible global function definition for 'rect'
    viewsp : drawmap: no visible global function definition for 'gray'
    viewsp : drawmap: no visible global function definition for 'points'
    Undefined global functions or variables:
     Filters abline as.dist choose.files density dev.off dist fivenum
     flush.console gray hclust hist is jpeg kmeans lines locator median
     mtext par pdf plot.new plot.window points polygon postscript quantile
     read.table rect runif segments tail text write.table
    Consider adding
     importFrom("grDevices", "dev.off", "gray", "jpeg", "pdf", "postscript")
     importFrom("graphics", "abline", "hist", "lines", "locator", "mtext",
     "par", "plot.new", "plot.window", "points", "polygon",
     "rect", "segments", "text")
     importFrom("methods", "is")
     importFrom("stats", "as.dist", "density", "dist", "fivenum", "hclust",
     "kmeans", "median", "quantile", "runif")
     importFrom("utils", "Filters", "choose.files", "flush.console",
     "read.table", "tail", "write.table")
    to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
    contains 'methods').
Flavor: r-devel-windows-ix86+x86_64

Version: 2.0
Check: R code for possible problems
Result: NOTE
    cleavogram : locategr: no visible global function definition for ‘is’
    cleavogram : locatesp: no visible global function definition for ‘is’
    cleavogram : locatesp: no visible global function definition for ‘tail’
    cleavogram : ya: no visible global function definition for ‘par’
    cleavogram : ya: no visible global function definition for ‘plot.new’
    cleavogram : ya: no visible global function definition for ‘is’
    cleavogram : ya: no visible global function definition for
     ‘plot.window’
    cleavogram : ya: no visible binding for global variable ‘tail’
    cleavogram : ya: no visible global function definition for ‘segments’
    cleavogram : ya: no visible global function definition for ‘text’
    cleavogram : ya: no visible global function definition for ‘points’
    cleavogram : ya: no visible global function definition for ‘lines’
    cleavogram : ya.small: no visible global function definition for ‘par’
    cleavogram : ya.small: no visible global function definition for
     ‘plot.new’
    cleavogram : ya.small: no visible global function definition for ‘is’
    cleavogram : ya.small: no visible global function definition for
     ‘plot.window’
    cleavogram : ya.small: no visible global function definition for
     ‘abline’
    cleavogram : ya.small: no visible global function definition for ‘rect’
    cleavogram : ya.small: no visible global function definition for ‘gray’
    cleavogram : ya.small: no visible global function definition for
     ‘points’
    cleavogram : ya.small: no visible global function definition for
     ‘segments’
    cleavogram : ya.small: no visible binding for global variable ‘tail’
    cleavogram : ya.small: no visible global function definition for
     ‘lines’
    cleavogram : savecleavogram : savefic: no visible global function
     definition for ‘postscript’
    cleavogram : savecleavogram : savefic: no visible global function
     definition for ‘pdf’
    cleavogram : savecleavogram : savefic: no visible global function
     definition for ‘jpeg’
    cleavogram : savecleavogram : savefic: no visible global function
     definition for ‘dev.off’
    cleavogram : flatpartition: no visible global function definition for
     ‘is’
    cleavogram : loadbranch: no visible global function definition for ‘is’
    cleavogram : loadbranch: no visible global function definition for
     ‘gray’
    cleavogram : loadbranch : drawmap: no visible global function
     definition for ‘par’
    cleavogram : loadbranch : drawmap: no visible global function
     definition for ‘plot.new’
    cleavogram : loadbranch : drawmap: no visible global function
     definition for ‘plot’
    cleavogram : loadbranch : drawmap: no visible global function
     definition for ‘abline’
    cleavogram : loadbranch : drawmap: no visible global function
     definition for ‘rect’
    cleavogram : loadbranch : drawmap: no visible global function
     definition for ‘points’
    cleavogram : showresult: no visible global function definition for ‘is’
    cleavogram : loadcombo: no visible global function definition for ‘is’
    cleavogram : <anonymous>: no visible global function definition for
     ‘is’
    creategrid : drawgrid: no visible global function definition for ‘par’
    creategrid : drawgrid: no visible global function definition for
     ‘plot.new’
    creategrid : drawgrid: no visible global function definition for
     ‘points’
    creategrid : drawgrid: no visible global function definition for
     ‘abline’
    creategrid : drawrich: no visible global function definition for ‘par’
    creategrid : drawrich: no visible global function definition for
     ‘plot.new’
    creategrid : drawrich: no visible global function definition for ‘rect’
    creategrid : drawrich: no visible global function definition for ‘gray’
    creategrid : drawrich: no visible global function definition for
     ‘abline’
    creategrid : constructpdf: no visible global function definition for
     ‘pdf’
    creategrid : constructpdf: no visible global function definition for
     ‘plot’
    creategrid : constructpdf: no visible global function definition for
     ‘text’
    creategrid : constructpdf: no visible global function definition for
     ‘dev.off’
    dotinfer: no visible global function definition for ‘hclust’
    dotinfer: no visible global function definition for ‘as.dist’
    dotinfer : ChangeMatrix: no visible global function definition for
     ‘hclust’
    dotinfer : ChangeMatrix: no visible global function definition for
     ‘as.dist’
    dotinfer : dendroplot: no visible global function definition for ‘par’
    dotinfer : dendroplot: no visible global function definition for ‘plot’
    dotinfer : dendroplot: no visible global function definition for
     ‘segments’
    dotinfer : dendroplot: no visible global function definition for
     ‘abline’
    dotinfer : dnplot: no visible global function definition for ‘par’
    dotinfer : dnplot: no visible global function definition for ‘plot’
    dotinfer : dnplot: no visible global function definition for ‘gray’
    dotinfer : dnplot: no visible global function definition for ‘mtext’
    dotinfer : dnplot: no visible global function definition for ‘points’
    dotinfer : dnplot: no visible global function definition for ‘segments’
    dotinfer : replot: no visible global function definition for ‘par’
    dotinfer : replot: no visible global function definition for ‘density’
    dotinfer : replot: no visible global function definition for ‘points’
    dotinfer : replot: no visible global function definition for ‘mtext’
    dotinfer : replot: no visible global function definition for ‘polygon’
    dotinfer : replot: no visible global function definition for ‘tail’
    dotinfer : replot: no visible global function definition for ‘abline’
    dotinfer : plotintensity : plotmtx: no visible global function
     definition for ‘plot.new’
    dotinfer : plotintensity : plotmtx: no visible global function
     definition for ‘par’
    dotinfer : plotintensity : plotmtx: no visible global function
     definition for ‘plot.window’
    dotinfer : plotintensity : plotmtx: no visible global function
     definition for ‘gray’
    dotinfer : plotintensity : plotmtx: no visible global function
     definition for ‘rect’
    dotinfer : plotintensity : plotmtx: no visible global function
     definition for ‘pdf’
    dotinfer : plotintensity : plotmtx: no visible global function
     definition for ‘dev.off’
    dotinfer : shownetwork: no visible global function definition for
     ‘gray’
    dotinfer : shownetwork : <anonymous>: no visible global function
     definition for ‘gray’
    dotinfer : <anonymous>: no visible global function definition for
     ‘plot’
    gridinfer: no visible global function definition for ‘read.table’
    gridinfer: no visible global function definition for ‘dist’
    nam: no visible global function definition for ‘flush.console’
    outgis: no visible global function definition for ‘write.table’
    partitionindex: no visible global function definition for ‘runif’
    partitionindex: no visible global function definition for ‘hist’
    partitionindex: no visible global function definition for ‘abline’
    partitionindex: no visible global function definition for ‘fivenum’
    pointDemo: no visible global function definition for ‘plot’
    pointDemo : drawing: no visible global function definition for ‘rect’
    pointDemo : drawing: no visible global function definition for ‘text’
    pointDemo : drawing: no visible global function definition for
     ‘locator’
    pointDemo : movept: no visible global function definition for ‘par’
    pointDemo : movept: no visible global function definition for ‘plot’
    pointDemo : movept: no visible global function definition for ‘rect’
    pointDemo : movept: no visible global function definition for ‘gray’
    pointDemo : movept: no visible global function definition for ‘text’
    pointDemo : movept: no visible global function definition for ‘points’
    pointDemo : movept: no visible global function definition for ‘dist’
    pointDemo : movept: no visible global function definition for ‘mtext’
    pointDemo : rotate: no visible global function definition for ‘par’
    pointDemo : rotate: no visible global function definition for ‘plot’
    pointDemo : rotate: no visible global function definition for ‘rect’
    pointDemo : rotate: no visible global function definition for ‘gray’
    pointDemo : rotate: no visible global function definition for ‘text’
    pointDemo : rotate: no visible global function definition for ‘points’
    pointDemo : rotate: no visible global function definition for ‘dist’
    pointDemo : rotate: no visible global function definition for ‘mtext’
    pointDemo : refresh: no visible global function definition for ‘par’
    pointDemo : refresh: no visible global function definition for ‘plot’
    pointDemo : refresh: no visible global function definition for ‘mtext’
    pointDemo : refresh: no visible global function definition for ‘dist’
    procdnpoint: no visible global function definition for ‘dist’
    read.coord: no visible binding for global variable ‘Filters’
    stablecouple: no visible global function definition for ‘median’
    stablecouple : kfast: no visible global function definition for
     ‘kmeans’
    stablecouple: no visible binding for global variable ‘quantile’
    viewsp : loadpartition: no visible global function definition for ‘is’
    viewsp : drawmap: no visible global function definition for ‘par’
    viewsp : drawmap: no visible global function definition for ‘plot.new’
    viewsp : drawmap: no visible global function definition for ‘plot’
    viewsp : drawmap: no visible global function definition for ‘abline’
    viewsp : drawmap: no visible global function definition for ‘rect’
    viewsp : drawmap: no visible global function definition for ‘gray’
    viewsp : drawmap: no visible global function definition for ‘points’
    Undefined global functions or variables:
     Filters abline as.dist density dev.off dist fivenum flush.console
     gray hclust hist is jpeg kmeans lines locator median mtext par pdf
     plot plot.new plot.window points polygon postscript quantile
     read.table rect runif segments tail text write.table
    Consider adding
     importFrom("grDevices", "dev.off", "gray", "jpeg", "pdf", "postscript")
     importFrom("graphics", "abline", "hist", "lines", "locator", "mtext",
     "par", "plot", "plot.new", "plot.window", "points",
     "polygon", "rect", "segments", "text")
     importFrom("methods", "is")
     importFrom("stats", "as.dist", "density", "dist", "fivenum", "hclust",
     "kmeans", "median", "quantile", "runif")
     importFrom("utils", "flush.console", "read.table", "tail",
     "write.table")
    to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
    contains 'methods').
    
    Found the following assignments to the global environment:
    File ‘SyNet/R/cleavogram.r’:
     assign(tclvalue(outpartition), rslt, pos = 1)
    File ‘SyNet/R/creategrid.r’:
     assign(ReturnVal, outobj, envir = .GlobalEnv)
    File ‘SyNet/R/dotinfer.r’:
     assign(tclvalue(outputname), out, envir = .GlobalEnv)
Flavor: r-release-linux-x86_64

Version: 2.0
Check: Rd line widths
Result: NOTE
    Rd file 'SyNet-package.rd':
     \examples lines wider than 100 characters:
     # Run NAM method on the previously inferred sympatry network
    
    Rd file 'acshgral.rd':
     \examples lines wider than 100 characters:
     #Display relationships into a parenthetical notation. You can track the indices of the species in the
    
    Rd file 'gridinfer.rd':
     \examples lines wider than 100 characters:
     #are nested inside it. In a network analysis this kind of element will behave as intermediary node.
    
    Rd file 'reweight.rd':
     \examples lines wider than 100 characters:
     plot(unlist(ej),unlist(reweight(ej)), xlab = "Input matrix", ylab = "Reweighted matrix", main = "First reweighting")
    
    These lines will be truncated in the PDF manual.
Flavor: r-release-linux-x86_64

Version: 2.0
Check: R code for possible problems
Result: NOTE
    cleavogram : locategr: no visible global function definition for 'is'
    cleavogram : locatesp: no visible global function definition for 'is'
    cleavogram : locatesp: no visible global function definition for 'tail'
    cleavogram : ya: no visible global function definition for 'par'
    cleavogram : ya: no visible global function definition for 'plot.new'
    cleavogram : ya: no visible global function definition for 'is'
    cleavogram : ya: no visible global function definition for
     'plot.window'
    cleavogram : ya: no visible binding for global variable 'tail'
    cleavogram : ya: no visible global function definition for 'segments'
    cleavogram : ya: no visible global function definition for 'text'
    cleavogram : ya: no visible global function definition for 'points'
    cleavogram : ya: no visible global function definition for 'lines'
    cleavogram : ya.small: no visible global function definition for 'par'
    cleavogram : ya.small: no visible global function definition for
     'plot.new'
    cleavogram : ya.small: no visible global function definition for 'is'
    cleavogram : ya.small: no visible global function definition for
     'plot.window'
    cleavogram : ya.small: no visible global function definition for
     'abline'
    cleavogram : ya.small: no visible global function definition for 'rect'
    cleavogram : ya.small: no visible global function definition for 'gray'
    cleavogram : ya.small: no visible global function definition for
     'points'
    cleavogram : ya.small: no visible global function definition for
     'segments'
    cleavogram : ya.small: no visible binding for global variable 'tail'
    cleavogram : ya.small: no visible global function definition for
     'lines'
    cleavogram : savecleavogram : savefic: no visible global function
     definition for 'postscript'
    cleavogram : savecleavogram : savefic: no visible global function
     definition for 'pdf'
    cleavogram : savecleavogram : savefic: no visible global function
     definition for 'jpeg'
    cleavogram : savecleavogram : savefic: no visible global function
     definition for 'dev.off'
    cleavogram : flatpartition: no visible global function definition for
     'is'
    cleavogram : loadbranch: no visible global function definition for 'is'
    cleavogram : loadbranch: no visible global function definition for
     'gray'
    cleavogram : loadbranch : drawmap: no visible global function
     definition for 'par'
    cleavogram : loadbranch : drawmap: no visible global function
     definition for 'plot.new'
    cleavogram : loadbranch : drawmap: no visible global function
     definition for 'plot'
    cleavogram : loadbranch : drawmap: no visible global function
     definition for 'abline'
    cleavogram : loadbranch : drawmap: no visible global function
     definition for 'rect'
    cleavogram : loadbranch : drawmap: no visible global function
     definition for 'points'
    cleavogram : showresult: no visible global function definition for 'is'
    cleavogram : loadcombo: no visible global function definition for 'is'
    cleavogram : <anonymous>: no visible global function definition for
     'is'
    creategrid : drawgrid: no visible global function definition for 'par'
    creategrid : drawgrid: no visible global function definition for
     'plot.new'
    creategrid : drawgrid: no visible global function definition for
     'points'
    creategrid : drawgrid: no visible global function definition for
     'abline'
    creategrid : drawrich: no visible global function definition for 'par'
    creategrid : drawrich: no visible global function definition for
     'plot.new'
    creategrid : drawrich: no visible global function definition for 'rect'
    creategrid : drawrich: no visible global function definition for 'gray'
    creategrid : drawrich: no visible global function definition for
     'abline'
    creategrid : constructpdf: no visible global function definition for
     'pdf'
    creategrid : constructpdf: no visible global function definition for
     'plot'
    creategrid : constructpdf: no visible global function definition for
     'text'
    creategrid : constructpdf: no visible global function definition for
     'dev.off'
    dotinfer: no visible global function definition for 'hclust'
    dotinfer: no visible global function definition for 'as.dist'
    dotinfer : ChangeMatrix: no visible global function definition for
     'hclust'
    dotinfer : ChangeMatrix: no visible global function definition for
     'as.dist'
    dotinfer : dendroplot: no visible global function definition for 'par'
    dotinfer : dendroplot: no visible global function definition for 'plot'
    dotinfer : dendroplot: no visible global function definition for
     'segments'
    dotinfer : dendroplot: no visible global function definition for
     'abline'
    dotinfer : dnplot: no visible global function definition for 'par'
    dotinfer : dnplot: no visible global function definition for 'plot'
    dotinfer : dnplot: no visible global function definition for 'gray'
    dotinfer : dnplot: no visible global function definition for 'mtext'
    dotinfer : dnplot: no visible global function definition for 'points'
    dotinfer : dnplot: no visible global function definition for 'segments'
    dotinfer : replot: no visible global function definition for 'par'
    dotinfer : replot: no visible global function definition for 'density'
    dotinfer : replot: no visible global function definition for 'points'
    dotinfer : replot: no visible global function definition for 'mtext'
    dotinfer : replot: no visible global function definition for 'polygon'
    dotinfer : replot: no visible global function definition for 'tail'
    dotinfer : replot: no visible global function definition for 'abline'
    dotinfer : plotintensity : plotmtx: no visible global function
     definition for 'plot.new'
    dotinfer : plotintensity : plotmtx: no visible global function
     definition for 'par'
    dotinfer : plotintensity : plotmtx: no visible global function
     definition for 'plot.window'
    dotinfer : plotintensity : plotmtx: no visible global function
     definition for 'gray'
    dotinfer : plotintensity : plotmtx: no visible global function
     definition for 'rect'
    dotinfer : plotintensity : plotmtx: no visible global function
     definition for 'pdf'
    dotinfer : plotintensity : plotmtx: no visible global function
     definition for 'dev.off'
    dotinfer : shownetwork: no visible global function definition for
     'gray'
    dotinfer : shownetwork : <anonymous>: no visible global function
     definition for 'gray'
    dotinfer : <anonymous>: no visible global function definition for
     'plot'
    gridinfer: no visible global function definition for 'read.table'
    gridinfer: no visible global function definition for 'dist'
    nam: no visible global function definition for 'flush.console'
    outgis: no visible global function definition for 'write.table'
    partitionindex: no visible global function definition for 'runif'
    partitionindex: no visible global function definition for 'hist'
    partitionindex: no visible global function definition for 'abline'
    partitionindex: no visible global function definition for 'fivenum'
    pointDemo: no visible global function definition for 'plot'
    pointDemo : drawing: no visible global function definition for 'rect'
    pointDemo : drawing: no visible global function definition for 'text'
    pointDemo : drawing: no visible global function definition for
     'locator'
    pointDemo : movept: no visible global function definition for 'par'
    pointDemo : movept: no visible global function definition for 'plot'
    pointDemo : movept: no visible global function definition for 'rect'
    pointDemo : movept: no visible global function definition for 'gray'
    pointDemo : movept: no visible global function definition for 'text'
    pointDemo : movept: no visible global function definition for 'points'
    pointDemo : movept: no visible global function definition for 'dist'
    pointDemo : movept: no visible global function definition for 'mtext'
    pointDemo : rotate: no visible global function definition for 'par'
    pointDemo : rotate: no visible global function definition for 'plot'
    pointDemo : rotate: no visible global function definition for 'rect'
    pointDemo : rotate: no visible global function definition for 'gray'
    pointDemo : rotate: no visible global function definition for 'text'
    pointDemo : rotate: no visible global function definition for 'points'
    pointDemo : rotate: no visible global function definition for 'dist'
    pointDemo : rotate: no visible global function definition for 'mtext'
    pointDemo : refresh: no visible global function definition for 'par'
    pointDemo : refresh: no visible global function definition for 'plot'
    pointDemo : refresh: no visible global function definition for 'mtext'
    pointDemo : refresh: no visible global function definition for 'dist'
    procdnpoint: no visible global function definition for 'dist'
    read.coord: no visible global function definition for 'choose.files'
    read.coord: no visible binding for global variable 'Filters'
    stablecouple: no visible global function definition for 'median'
    stablecouple : kfast: no visible global function definition for
     'kmeans'
    stablecouple: no visible binding for global variable 'quantile'
    viewsp : loadpartition: no visible global function definition for 'is'
    viewsp : drawmap: no visible global function definition for 'par'
    viewsp : drawmap: no visible global function definition for 'plot.new'
    viewsp : drawmap: no visible global function definition for 'plot'
    viewsp : drawmap: no visible global function definition for 'abline'
    viewsp : drawmap: no visible global function definition for 'rect'
    viewsp : drawmap: no visible global function definition for 'gray'
    viewsp : drawmap: no visible global function definition for 'points'
    Undefined global functions or variables:
     Filters abline as.dist choose.files density dev.off dist fivenum
     flush.console gray hclust hist is jpeg kmeans lines locator median
     mtext par pdf plot plot.new plot.window points polygon postscript
     quantile read.table rect runif segments tail text write.table
    Consider adding
     importFrom("grDevices", "dev.off", "gray", "jpeg", "pdf", "postscript")
     importFrom("graphics", "abline", "hist", "lines", "locator", "mtext",
     "par", "plot", "plot.new", "plot.window", "points",
     "polygon", "rect", "segments", "text")
     importFrom("methods", "is")
     importFrom("stats", "as.dist", "density", "dist", "fivenum", "hclust",
     "kmeans", "median", "quantile", "runif")
     importFrom("utils", "Filters", "choose.files", "flush.console",
     "read.table", "tail", "write.table")
    to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
    contains 'methods').
Flavors: r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 2.0
Check: R code for possible problems
Result: NOTE
    cleavogram : locategr: no visible global function definition for ‘is’
    cleavogram : locatesp: no visible global function definition for ‘is’
    cleavogram : locatesp: no visible global function definition for ‘tail’
    cleavogram : ya: no visible global function definition for ‘par’
    cleavogram : ya: no visible global function definition for ‘plot.new’
    cleavogram : ya: no visible global function definition for ‘is’
    cleavogram : ya: no visible global function definition for
     ‘plot.window’
    cleavogram : ya: no visible binding for global variable ‘tail’
    cleavogram : ya: no visible global function definition for ‘segments’
    cleavogram : ya: no visible global function definition for ‘text’
    cleavogram : ya: no visible global function definition for ‘points’
    cleavogram : ya: no visible global function definition for ‘lines’
    cleavogram : ya.small: no visible global function definition for ‘par’
    cleavogram : ya.small: no visible global function definition for
     ‘plot.new’
    cleavogram : ya.small: no visible global function definition for ‘is’
    cleavogram : ya.small: no visible global function definition for
     ‘plot.window’
    cleavogram : ya.small: no visible global function definition for
     ‘abline’
    cleavogram : ya.small: no visible global function definition for ‘rect’
    cleavogram : ya.small: no visible global function definition for ‘gray’
    cleavogram : ya.small: no visible global function definition for
     ‘points’
    cleavogram : ya.small: no visible global function definition for
     ‘segments’
    cleavogram : ya.small: no visible binding for global variable ‘tail’
    cleavogram : ya.small: no visible global function definition for
     ‘lines’
    cleavogram : savecleavogram : savefic: no visible global function
     definition for ‘postscript’
    cleavogram : savecleavogram : savefic: no visible global function
     definition for ‘pdf’
    cleavogram : savecleavogram : savefic: no visible global function
     definition for ‘jpeg’
    cleavogram : savecleavogram : savefic: no visible global function
     definition for ‘dev.off’
    cleavogram : flatpartition: no visible global function definition for
     ‘is’
    cleavogram : loadbranch: no visible global function definition for ‘is’
    cleavogram : loadbranch: no visible global function definition for
     ‘gray’
    cleavogram : loadbranch : drawmap: no visible global function
     definition for ‘par’
    cleavogram : loadbranch : drawmap: no visible global function
     definition for ‘plot.new’
    cleavogram : loadbranch : drawmap: no visible global function
     definition for ‘plot’
    cleavogram : loadbranch : drawmap: no visible global function
     definition for ‘abline’
    cleavogram : loadbranch : drawmap: no visible global function
     definition for ‘rect’
    cleavogram : loadbranch : drawmap: no visible global function
     definition for ‘points’
    cleavogram : showresult: no visible global function definition for ‘is’
    cleavogram : loadcombo: no visible global function definition for ‘is’
    cleavogram : <anonymous>: no visible global function definition for
     ‘is’
    creategrid : drawgrid: no visible global function definition for ‘par’
    creategrid : drawgrid: no visible global function definition for
     ‘plot.new’
    creategrid : drawgrid: no visible global function definition for
     ‘points’
    creategrid : drawgrid: no visible global function definition for
     ‘abline’
    creategrid : drawrich: no visible global function definition for ‘par’
    creategrid : drawrich: no visible global function definition for
     ‘plot.new’
    creategrid : drawrich: no visible global function definition for ‘rect’
    creategrid : drawrich: no visible global function definition for ‘gray’
    creategrid : drawrich: no visible global function definition for
     ‘abline’
    creategrid : constructpdf: no visible global function definition for
     ‘pdf’
    creategrid : constructpdf: no visible global function definition for
     ‘plot’
    creategrid : constructpdf: no visible global function definition for
     ‘text’
    creategrid : constructpdf: no visible global function definition for
     ‘dev.off’
    dotinfer: no visible global function definition for ‘hclust’
    dotinfer: no visible global function definition for ‘as.dist’
    dotinfer : ChangeMatrix: no visible global function definition for
     ‘hclust’
    dotinfer : ChangeMatrix: no visible global function definition for
     ‘as.dist’
    dotinfer : dendroplot: no visible global function definition for ‘par’
    dotinfer : dendroplot: no visible global function definition for ‘plot’
    dotinfer : dendroplot: no visible global function definition for
     ‘segments’
    dotinfer : dendroplot: no visible global function definition for
     ‘abline’
    dotinfer : dnplot: no visible global function definition for ‘par’
    dotinfer : dnplot: no visible global function definition for ‘plot’
    dotinfer : dnplot: no visible global function definition for ‘gray’
    dotinfer : dnplot: no visible global function definition for ‘mtext’
    dotinfer : dnplot: no visible global function definition for ‘points’
    dotinfer : dnplot: no visible global function definition for ‘segments’
    dotinfer : replot: no visible global function definition for ‘par’
    dotinfer : replot: no visible global function definition for ‘density’
    dotinfer : replot: no visible global function definition for ‘points’
    dotinfer : replot: no visible global function definition for ‘mtext’
    dotinfer : replot: no visible global function definition for ‘polygon’
    dotinfer : replot: no visible global function definition for ‘tail’
    dotinfer : replot: no visible global function definition for ‘abline’
    dotinfer : plotintensity : plotmtx: no visible global function
     definition for ‘plot.new’
    dotinfer : plotintensity : plotmtx: no visible global function
     definition for ‘par’
    dotinfer : plotintensity : plotmtx: no visible global function
     definition for ‘plot.window’
    dotinfer : plotintensity : plotmtx: no visible global function
     definition for ‘gray’
    dotinfer : plotintensity : plotmtx: no visible global function
     definition for ‘rect’
    dotinfer : plotintensity : plotmtx: no visible global function
     definition for ‘pdf’
    dotinfer : plotintensity : plotmtx: no visible global function
     definition for ‘dev.off’
    dotinfer : shownetwork: no visible global function definition for
     ‘gray’
    dotinfer : shownetwork : <anonymous>: no visible global function
     definition for ‘gray’
    dotinfer : <anonymous>: no visible global function definition for
     ‘plot’
    gridinfer: no visible global function definition for ‘read.table’
    gridinfer: no visible global function definition for ‘dist’
    nam: no visible global function definition for ‘flush.console’
    outgis: no visible global function definition for ‘write.table’
    partitionindex: no visible global function definition for ‘runif’
    partitionindex: no visible global function definition for ‘hist’
    partitionindex: no visible global function definition for ‘abline’
    partitionindex: no visible global function definition for ‘fivenum’
    pointDemo: no visible global function definition for ‘plot’
    pointDemo : drawing: no visible global function definition for ‘rect’
    pointDemo : drawing: no visible global function definition for ‘text’
    pointDemo : drawing: no visible global function definition for
     ‘locator’
    pointDemo : movept: no visible global function definition for ‘par’
    pointDemo : movept: no visible global function definition for ‘plot’
    pointDemo : movept: no visible global function definition for ‘rect’
    pointDemo : movept: no visible global function definition for ‘gray’
    pointDemo : movept: no visible global function definition for ‘text’
    pointDemo : movept: no visible global function definition for ‘points’
    pointDemo : movept: no visible global function definition for ‘dist’
    pointDemo : movept: no visible global function definition for ‘mtext’
    pointDemo : rotate: no visible global function definition for ‘par’
    pointDemo : rotate: no visible global function definition for ‘plot’
    pointDemo : rotate: no visible global function definition for ‘rect’
    pointDemo : rotate: no visible global function definition for ‘gray’
    pointDemo : rotate: no visible global function definition for ‘text’
    pointDemo : rotate: no visible global function definition for ‘points’
    pointDemo : rotate: no visible global function definition for ‘dist’
    pointDemo : rotate: no visible global function definition for ‘mtext’
    pointDemo : refresh: no visible global function definition for ‘par’
    pointDemo : refresh: no visible global function definition for ‘plot’
    pointDemo : refresh: no visible global function definition for ‘mtext’
    pointDemo : refresh: no visible global function definition for ‘dist’
    procdnpoint: no visible global function definition for ‘dist’
    read.coord: no visible binding for global variable ‘Filters’
    stablecouple: no visible global function definition for ‘median’
    stablecouple : kfast: no visible global function definition for
     ‘kmeans’
    stablecouple: no visible binding for global variable ‘quantile’
    viewsp : loadpartition: no visible global function definition for ‘is’
    viewsp : drawmap: no visible global function definition for ‘par’
    viewsp : drawmap: no visible global function definition for ‘plot.new’
    viewsp : drawmap: no visible global function definition for ‘plot’
    viewsp : drawmap: no visible global function definition for ‘abline’
    viewsp : drawmap: no visible global function definition for ‘rect’
    viewsp : drawmap: no visible global function definition for ‘gray’
    viewsp : drawmap: no visible global function definition for ‘points’
    Undefined global functions or variables:
     Filters abline as.dist density dev.off dist fivenum flush.console
     gray hclust hist is jpeg kmeans lines locator median mtext par pdf
     plot plot.new plot.window points polygon postscript quantile
     read.table rect runif segments tail text write.table
    Consider adding
     importFrom("grDevices", "dev.off", "gray", "jpeg", "pdf", "postscript")
     importFrom("graphics", "abline", "hist", "lines", "locator", "mtext",
     "par", "plot", "plot.new", "plot.window", "points",
     "polygon", "rect", "segments", "text")
     importFrom("methods", "is")
     importFrom("stats", "as.dist", "density", "dist", "fivenum", "hclust",
     "kmeans", "median", "quantile", "runif")
     importFrom("utils", "flush.console", "read.table", "tail",
     "write.table")
    to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
    contains 'methods').
Flavors: r-release-osx-x86_64, r-oldrel-osx-x86_64