CRAN Package Check Results for Package StratifiedMedicine

Last updated on 2020-04-25 01:53:19 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.2.3 14.06 596.95 611.01 OK
r-devel-linux-x86_64-debian-gcc 0.2.3 12.13 486.70 498.83 OK
r-devel-linux-x86_64-fedora-clang 0.2.3 782.53 OK
r-devel-linux-x86_64-fedora-gcc 0.2.3 746.87 OK
r-patched-linux-x86_64 0.2.3 12.96 609.34 622.30 OK
r-patched-osx-x86_64 0.2.2 WARN
r-patched-solaris-x86 0.2.3 1032.10 OK
r-release-linux-x86_64 0.2.3 11.89 554.05 565.94 OK
r-release-windows-ix86+x86_64 0.2.3 32.00 324.00 356.00 OK
r-release-osx-x86_64 0.2.3 OK
r-oldrel-windows-ix86+x86_64 0.2.3 18.00 308.00 326.00 OK
r-oldrel-osx-x86_64 0.2.2 OK

Check Details

Version: 0.2.2
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building ‘SM_PRISM.Rmd’ using rmarkdown
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    Loading required package: grid
    Loading required package: libcoin
    Loading required package: mvtnorm
    Observed Data
    Filtering: filter_glmnet
    Subgroup Identification: submod_weibull
    Parameter Estimation: param_cox
    Bootstrap 50 resamples
    Warning in survreg.fit(X, Y, weights, offset, init = init, controlvals = control, :
     Ran out of iterations and did not converge
    Warning in survreg.fit(X, Y, weights, offset, init = init, controlvals = control, :
     Ran out of iterations and did not converge
    Warning in survreg.fit(X, Y, weights, offset, init = init, controlvals = control, :
     Ran out of iterations and did not converge
    dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    dyld: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    Error: processing vignette 'SM_PRISM.Rmd' failed with diagnostics:
    pandoc document conversion failed with error 6
    --- failed re-building ‘SM_PRISM.Rmd’
    
    --- re-building ‘SM_User_Models.Rmd’ using rmarkdown
    Observed Data
    Filtering: filter_lasso
    Loading required package: glmnet
    Loading required package: Matrix
    Loaded glmnet 3.0-2
    
    PLE: ple_ranger_mtry
    Loading required package: ranger
    Subgroup Identification: submod_lmtree_pred
    Loading required package: partykit
    Loading required package: grid
    Loading required package: libcoin
    Loading required package: mvtnorm
    Parameter Estimation: param_rlm
    Loading required package: MASS
    dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    dyld: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    Error: processing vignette 'SM_User_Models.Rmd' failed with diagnostics:
    pandoc document conversion failed with error 6
    --- failed re-building ‘SM_User_Models.Rmd’
    
    SUMMARY: processing the following files failed:
     ‘SM_PRISM.Rmd’ ‘SM_User_Models.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-patched-osx-x86_64