CRAN Package Check Results for Package REddyProc

Last updated on 2020-04-25 01:53:15 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.2.2 56.67 268.38 325.05 OK
r-devel-linux-x86_64-debian-gcc 1.2.2 42.18 200.77 242.95 OK
r-devel-linux-x86_64-fedora-clang 1.2.2 395.73 OK
r-devel-linux-x86_64-fedora-gcc 1.2.2 390.97 OK
r-devel-windows-ix86+x86_64 1.2.2 130.00 393.00 523.00 OK
r-patched-linux-x86_64 1.2.2 50.06 258.19 308.25 OK
r-patched-osx-x86_64 1.2.2 WARN
r-patched-solaris-x86 1.2.2 495.00 OK
r-release-linux-x86_64 1.2.2 46.71 247.46 294.17 OK
r-release-windows-ix86+x86_64 1.2.2 120.00 504.00 624.00 OK
r-release-osx-x86_64 1.2.2 OK
r-oldrel-windows-ix86+x86_64 1.2.2 81.00 360.00 441.00 OK
r-oldrel-osx-x86_64 1.2.2 OK

Check Details

Version: 1.2.2
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building ‘DEGebExample.Rmd’ using knitr
    --- finished re-building ‘DEGebExample.Rmd’
    
    --- re-building ‘gapFilling.Rmd’ using knitr
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    Converted time format 'YDH' to POSIX with column name 'DateTime'.
    New sEddyProc class for site 'DE-Tha'
    Initialized variable 'LE' with 6998 real gaps for gap filling of all 17520 values (to estimate uncertainties).
    Full MDS algorithm for gap filling of 'LE.QF_0' with LUT(Rg, Tsoil, Step) and MDC.
    Look up table with window size of 7 days with Rg Tsoil Step
    ............................................................
    .............................................................
    ........................................................16806
    Look up table with window size of 14 days with Rg Tsoil Step
    .......352
    Look up table with window size of 7 days with Rg
    ...84
    Mean diurnal course with window size of 0 days: .
    ..167
    Mean diurnal course with window size of 1 days: .
    .9
    Mean diurnal course with window size of 2 days: .
    .9
    Look up table with window size of 21 days with Rg Tsoil Step
    80
    Look up table with window size of 28 days with Rg Tsoil Step
    4
    Look up table with window size of 35 days with Rg Tsoil Step
    0
    Look up table with window size of 42 days with Rg Tsoil Step
    0
    Look up table with window size of 49 days with Rg Tsoil Step
    0
    Look up table with window size of 56 days with Rg Tsoil Step
    0
    Look up table with window size of 63 days with Rg Tsoil Step
    0
    Look up table with window size of 70 days with Rg Tsoil Step
    0
    Look up table with window size of 14 days with Rg
    8
    Look up table with window size of 21 days with Rg
    1
    Finished gap filling of 'LE' in 21 seconds. Artificial gaps filled: 17520, real gaps filled: 6998, unfilled (long) gaps: 0.
    Initialized variable 'NEE' with 6291 real gaps for gap filling of all 17520 values (to estimate uncertainties).
    Look up table with window size of 3 days with Rg rH Tair Tsoil Step
    ............................................................
    .............................................................
    ........................................................15743
    Look up table with window size of 6 days with Tair VPD Step
    .................1177
    Mean diurnal course with window size of 3 days: .
    ......149
    New sEddyProc class for site 'DE-Tha'
    Initialized variable 'NEE' with 6291 real gaps for gap filling of all 17520 values (to estimate uncertainties).
    Look up table with window size of 7 days with Rg VPD Tair
    ............................................................
    .............................................................
    ........................................................16587
    Look up table with window size of 14 days with Rg VPD Tair
    .........378
    Look up table with window size of 7 days with Rg
    .....184
    Mean diurnal course with window size of 0 days: .
    ...133
    Mean diurnal course with window size of 1 days: .
    ..43
    Mean diurnal course with window size of 2 days: .
    .1
    Look up table with window size of 21 days with Rg VPD Tair
    .100
    Look up table with window size of 28 days with Rg VPD Tair
    27
    Look up table with window size of 35 days with Rg VPD Tair
    10
    Look up table with window size of 42 days with Rg VPD Tair
    0
    Look up table with window size of 49 days with Rg VPD Tair
    3
    Look up table with window size of 56 days with Rg VPD Tair
    3
    Look up table with window size of 63 days with Rg VPD Tair
    3
    Look up table with window size of 70 days with Rg VPD Tair
    20
    Look up table with window size of 14 days with Rg
    28
    --- finished re-building ‘gapFilling.Rmd’
    
    --- re-building ‘uStarCases.Rmd’ using knitr
    --- finished re-building ‘uStarCases.Rmd’
    
    --- re-building ‘aggUncertainty.Rmd’ using rmarkdown_notangle
    dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    dyld: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    Error: processing vignette 'aggUncertainty.Rmd' failed with diagnostics:
    pandoc document conversion failed with error 6
    --- failed re-building ‘aggUncertainty.Rmd’
    
    --- re-building ‘bigleaf.Rmd’ using rmarkdown_notangle
    dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    dyld: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    Error: processing vignette 'bigleaf.Rmd' failed with diagnostics:
    pandoc document conversion failed with error 6
    --- failed re-building ‘bigleaf.Rmd’
    
    --- re-building ‘useCase.Rmd’ using rmarkdown_notangle
    dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    dyld: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    Error: processing vignette 'useCase.Rmd' failed with diagnostics:
    pandoc document conversion failed with error 6
    --- failed re-building ‘useCase.Rmd’
    
    SUMMARY: processing the following files failed:
     ‘aggUncertainty.Rmd’ ‘bigleaf.Rmd’ ‘useCase.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-patched-osx-x86_64