CRAN Package Check Results for Package RBesT

Last updated on 2020-04-25 01:53:14 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.6-0 137.80 346.12 483.92 NOTE
r-devel-linux-x86_64-debian-gcc 1.6-0 119.96 247.54 367.50 NOTE
r-devel-linux-x86_64-fedora-clang 1.6-0 579.26 NOTE
r-devel-linux-x86_64-fedora-gcc 1.6-0 642.44 NOTE
r-devel-windows-ix86+x86_64 1.6-0 312.00 503.00 815.00 NOTE
r-patched-linux-x86_64 1.6-0 123.29 331.76 455.05 NOTE
r-patched-osx-x86_64 1.6-0 WARN
r-patched-solaris-x86 1.6-0 646.60 NOTE
r-release-linux-x86_64 1.6-0 100.36 303.32 403.68 NOTE
r-release-windows-ix86+x86_64 1.6-0 290.00 543.00 833.00 NOTE
r-release-osx-x86_64 1.6-0 NOTE
r-oldrel-windows-ix86+x86_64 1.6-0 201.00 362.00 563.00 NOTE
r-oldrel-osx-x86_64 1.5-4 NOTE

Check Details

Version: 1.6-0
Check: for GNU extensions in Makefiles
Result: NOTE
    GNU make is a SystemRequirements.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-osx-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.6-0
Check: installed package size
Result: NOTE
     installed size is 33.1Mb
     sub-directories of 1Mb or more:
     doc 1.9Mb
     libs 30.1Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-ix86+x86_64, r-patched-osx-x86_64, r-patched-solaris-x86, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.6-0
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building ‘PoS_codata.Rmd’ using rmarkdown
    dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    dyld: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    Error: processing vignette 'PoS_codata.Rmd' failed with diagnostics:
    pandoc document conversion failed with error 6
    --- failed re-building ‘PoS_codata.Rmd’
    
    --- re-building ‘PoS_interim.Rmd’ using rmarkdown
    dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    dyld: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    Error: processing vignette 'PoS_interim.Rmd' failed with diagnostics:
    pandoc document conversion failed with error 6
    --- failed re-building ‘PoS_interim.Rmd’
    
    --- re-building ‘customizing_plots.Rmd’ using rmarkdown
    Loading required package: Rcpp
    This is RBesT version 1.6.0
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    This is bayesplot version 1.7.1
    - Online documentation and vignettes at mc-stan.org/bayesplot
    - bayesplot theme set to bayesplot::theme_default()
     * Does _not_ affect other ggplot2 plots
     * See ?bayesplot_theme_set for details on theme setting
    Warning: The largest R-hat is 1.14, indicating chains have not mixed.
    Running the chains for more iterations may help. See
    http://mc-stan.org/misc/warnings.html#r-hat
    Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
    Running the chains for more iterations may help. See
    http://mc-stan.org/misc/warnings.html#bulk-ess
    Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
    Running the chains for more iterations may help. See
    http://mc-stan.org/misc/warnings.html#tail-ess
    Warning in gMAP(cbind(y, y.se) ~ 1 | study, family = gaussian, data = transform(crohn, :
     Maximal Rhat > 1.1. Consider increasing RBesT.MC.warmup MCMC parameter.
    Final MCMC sample equivalent to less than 1000 independent draws.
    Please consider increasing the MCMC simulation size.
    dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    dyld: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    Error: processing vignette 'customizing_plots.Rmd' failed with diagnostics:
    pandoc document conversion failed with error 6
    --- failed re-building ‘customizing_plots.Rmd’
    
    --- re-building ‘introduction.Rmd’ using rmarkdown
    dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    dyld: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    Error: processing vignette 'introduction.Rmd' failed with diagnostics:
    pandoc document conversion failed with error 6
    --- failed re-building ‘introduction.Rmd’
    
    --- re-building ‘introduction_normal.Rmd’ using rmarkdown
    dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    dyld: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    Error: processing vignette 'introduction_normal.Rmd' failed with diagnostics:
    pandoc document conversion failed with error 6
    --- failed re-building ‘introduction_normal.Rmd’
    
    --- re-building ‘robustMAP.Rmd’ using rmarkdown
    Warning in calc_loc(mix, "mode") :
     Detected multiple modes.
    The ESS is determined for the largest mode, but ESS concept is ill-defined for multi-modal distributions.
    Warning in calc_loc(mix, "mode") :
     Detected multiple modes.
    The ESS is determined for the largest mode, but ESS concept is ill-defined for multi-modal distributions.
    Warning in calc_loc(mix, "mode") :
     Detected multiple modes.
    The ESS is determined for the largest mode, but ESS concept is ill-defined for multi-modal distributions.
    Warning in calc_loc(mix, "mode") :
     Detected multiple modes.
    The ESS is determined for the largest mode, but ESS concept is ill-defined for multi-modal distributions.
    Warning in calc_loc(mix, "mode") :
     Detected multiple modes.
    The ESS is determined for the largest mode, but ESS concept is ill-defined for multi-modal distributions.
    Warning in calc_loc(mix, "mode") :
     Detected multiple modes.
    The ESS is determined for the largest mode, but ESS concept is ill-defined for multi-modal distributions.
    Warning in calc_loc(mix, "mode") :
     Detected multiple modes.
    The ESS is determined for the largest mode, but ESS concept is ill-defined for multi-modal distributions.
    Warning in calc_loc(mix, "mode") :
     Detected multiple modes.
    The ESS is determined for the largest mode, but ESS concept is ill-defined for multi-modal distributions.
    Warning in calc_loc(mix, "mode") :
     Detected multiple modes.
    The ESS is determined for the largest mode, but ESS concept is ill-defined for multi-modal distributions.
    Warning in calc_loc(mix, "mode") :
     Detected multiple modes.
    The ESS is determined for the largest mode, but ESS concept is ill-defined for multi-modal distributions.
    Warning in calc_loc(mix, "mode") :
     Detected multiple modes.
    The ESS is determined for the largest mode, but ESS concept is ill-defined for multi-modal distributions.
    Warning in calc_loc(mix, "mode") :
     Detected multiple modes.
    The ESS is determined for the largest mode, but ESS concept is ill-defined for multi-modal distributions.
    Warning in calc_loc(mix, "mode") :
     Detected multiple modes.
    The ESS is determined for the largest mode, but ESS concept is ill-defined for multi-modal distributions.
    Warning in calc_loc(mix, "mode") :
     Detected multiple modes.
    The ESS is determined for the largest mode, but ESS concept is ill-defined for multi-modal distributions.
    Warning in calc_loc(mix, "mode") :
     Detected multiple modes.
    The ESS is determined for the largest mode, but ESS concept is ill-defined for multi-modal distributions.
    dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    dyld: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    Error: processing vignette 'robustMAP.Rmd' failed with diagnostics:
    pandoc document conversion failed with error 6
    --- failed re-building ‘robustMAP.Rmd’
    
    --- re-building ‘variances_MAP.Rmd’ using rmarkdown
    dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    dyld: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    Error: processing vignette 'variances_MAP.Rmd' failed with diagnostics:
    pandoc document conversion failed with error 6
    --- failed re-building ‘variances_MAP.Rmd’
    
    SUMMARY: processing the following files failed:
     ‘PoS_codata.Rmd’ ‘PoS_interim.Rmd’ ‘customizing_plots.Rmd’
     ‘introduction.Rmd’ ‘introduction_normal.Rmd’ ‘robustMAP.Rmd’
     ‘variances_MAP.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-patched-osx-x86_64

Version: 1.6-0
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘rstanarm’
Flavor: r-release-linux-x86_64

Version: 1.5-4
Check: installed package size
Result: NOTE
     installed size is 33.8Mb
     sub-directories of 1Mb or more:
     doc 2.7Mb
     libs 30.1Mb
Flavor: r-oldrel-osx-x86_64

Version: 1.5-4
Check: for GNU extensions in Makefiles
Result: NOTE
    GNU make is a SystemRequirements.
Flavor: r-oldrel-osx-x86_64