CRAN Package Check Results for Package PupilPre

Last updated on 2020-04-25 01:53:13 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.6.2 10.40 126.36 136.76 OK
r-devel-linux-x86_64-debian-gcc 0.6.2 8.80 95.11 103.91 OK
r-devel-linux-x86_64-fedora-clang 0.6.2 160.79 OK
r-devel-linux-x86_64-fedora-gcc 0.6.2 159.38 OK
r-devel-windows-ix86+x86_64 0.6.2 35.00 182.00 217.00 OK
r-patched-linux-x86_64 0.6.2 9.39 121.21 130.60 OK
r-patched-osx-x86_64 0.6.2 WARN
r-patched-solaris-x86 0.6.2 224.60 OK
r-release-linux-x86_64 0.6.2 9.54 112.78 122.32 OK
r-release-windows-ix86+x86_64 0.6.2 25.00 189.00 214.00 OK
r-release-osx-x86_64 0.6.2 OK
r-oldrel-windows-ix86+x86_64 0.6.2 11.00 134.00 145.00 OK
r-oldrel-osx-x86_64 0.6.2 OK

Check Details

Version: 0.6.2
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building ‘PupilPre_Basic_Preprocessing.Rmd’ using rmarkdown
    Loading required package: dplyr
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    Loading required package: rlang
    Loading required package: VWPre
    This is VWPre version 1.2.3. See NEWS for important changes.
    For package information, type 'help(package="VWPre")'.
    To cite this package, type 'citation(package="VWPre")'.
    This is PupilPre version 0.6.2. See NEWS for important changes.
    For package information, type 'help(package="PupilPre")'.
    To cite this package, type 'citation(package="PupilPre")'.
    dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    dyld: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    Error: processing vignette 'PupilPre_Basic_Preprocessing.Rmd' failed with diagnostics:
    pandoc document conversion failed with error 6
    --- failed re-building ‘PupilPre_Basic_Preprocessing.Rmd’
    
    --- re-building ‘PupilPre_Cleanup.Rmd’ using rmarkdown
    Loading required package: dplyr
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    Loading required package: rlang
    Loading required package: VWPre
    This is VWPre version 1.2.3. See NEWS for important changes.
    For package information, type 'help(package="VWPre")'.
    To cite this package, type 'citation(package="VWPre")'.
    This is PupilPre version 0.6.2. See NEWS for important changes.
    For package information, type 'help(package="PupilPre")'.
    To cite this package, type 'citation(package="PupilPre")'.
    Marking data points outside of 1920x1080.
    
    Recoding pupil size data.
    
    1.02% of data marked as off-screen
    dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    dyld: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    Error: processing vignette 'PupilPre_Cleanup.Rmd' failed with diagnostics:
    pandoc document conversion failed with error 6
    --- failed re-building ‘PupilPre_Cleanup.Rmd’
    
    --- re-building ‘PupilPre_Interpolation_and_Filtering.Rmd’ using rmarkdown
    Loading required package: dplyr
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    Loading required package: rlang
    Loading required package: VWPre
    This is VWPre version 1.2.3. See NEWS for important changes.
    For package information, type 'help(package="VWPre")'.
    To cite this package, type 'citation(package="VWPre")'.
    This is PupilPre version 0.6.2. See NEWS for important changes.
    For package information, type 'help(package="PupilPre")'.
    To cite this package, type 'citation(package="PupilPre")'.
    
    Running cleanup based on MAD (median absolute deviation) and robust Mahalanobis distance.
    
    Writing cleanup info to /Volumes/Temp/tmp/RtmpGwf2k5/ArtifactCleanupLog.rds.
    Loading file /Volumes/Temp/tmp/RtmpGwf2k5/UserCleanupLog.rds
    Applying cleanup based on /Volumes/Temp/tmp/RtmpGwf2k5/UserCleanupLog.rds
    dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    dyld: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    Error: processing vignette 'PupilPre_Interpolation_and_Filtering.Rmd' failed with diagnostics:
    pandoc document conversion failed with error 6
    --- failed re-building ‘PupilPre_Interpolation_and_Filtering.Rmd’
    
    --- re-building ‘PupilPre_Message_Alignment.Rmd’ using rmarkdown
    Loading required package: dplyr
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    Loading required package: rlang
    Loading required package: VWPre
    This is VWPre version 1.2.3. See NEWS for important changes.
    For package information, type 'help(package="VWPre")'.
    To cite this package, type 'citation(package="VWPre")'.
    This is PupilPre version 0.6.2. See NEWS for important changes.
    For package information, type 'help(package="PupilPre")'.
    To cite this package, type 'citation(package="PupilPre")'.
    Checking required columns...
     All required columns are present in the data.
    Checking optional columns...
     All optional columns are present in the data.
    Working on required columns...
     RECORDING_SESSION_LABEL renamed to Subject.
     item renamed to Item.
     Subject converted to factor.
     LEFT_PUPIL_SIZE converted to numeric.
     LEFT_GAZE_X converted to numeric.
     LEFT_GAZE_Y converted to numeric.
     LEFT_IN_BLINK converted to numeric.
     LEFT_IN_SACCADE converted to numeric.
     LEFT_ACCELERATION_X converted to numeric.
     LEFT_ACCELERATION_Y converted to numeric.
     LEFT_VELOCITY_X converted to numeric.
     LEFT_VELOCITY_Y converted to numeric.
     RIGHT_PUPIL_SIZE converted to numeric.
     RIGHT_GAZE_X converted to numeric.
     RIGHT_GAZE_Y converted to numeric.
     RIGHT_IN_BLINK converted to numeric.
     RIGHT_IN_SACCADE converted to numeric.
     RIGHT_ACCELERATION_X converted to numeric.
     RIGHT_ACCELERATION_Y converted to numeric.
     RIGHT_VELOCITY_X converted to numeric.
     RIGHT_VELOCITY_Y converted to numeric.
     TIMESTAMP converted to numeric.
     TRIAL_INDEX converted to numeric.
     Event variable created from Subject and TRIAL_INDEX
    Working on optional columns...
     SAMPLE_MESSAGE converted to factor.
     EYE_TRACKED converted to factor.
    dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    dyld: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    Error: processing vignette 'PupilPre_Message_Alignment.Rmd' failed with diagnostics:
    pandoc document conversion failed with error 6
    --- failed re-building ‘PupilPre_Message_Alignment.Rmd’
    
    --- re-building ‘PupilPre_Plotting.Rmd’ using rmarkdown
    Loading required package: dplyr
    
    Attaching package: 'dplyr'
    
    The following object is masked from 'package:gridExtra':
    
     combine
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    Loading required package: rlang
    Loading required package: VWPre
    This is VWPre version 1.2.3. See NEWS for important changes.
    For package information, type 'help(package="VWPre")'.
    To cite this package, type 'citation(package="VWPre")'.
    This is PupilPre version 0.6.2. See NEWS for important changes.
    For package information, type 'help(package="PupilPre")'.
    To cite this package, type 'citation(package="PupilPre")'.
    Grand average calculated using Event means.
    Grand average calculated using Event means.
    Grand average calculated using Event means.
    Grand average calculated using Event means.
    Grand average calculated using Event means.
    Grand average calculated using Event means.
    Grand average calculated using Event means.
    Grand average calculated using Subject means.
    Grand average of difference between EN3 and CH1 calculated using Subject means.
    Surface calculated using Event means.
    Surface calculated using Event means.
    Grand average calculated using Subject means.
    dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    dyld: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    Error: processing vignette 'PupilPre_Plotting.Rmd' failed with diagnostics:
    pandoc document conversion failed with error 6
    --- failed re-building ‘PupilPre_Plotting.Rmd’
    
    SUMMARY: processing the following files failed:
     ‘PupilPre_Basic_Preprocessing.Rmd’ ‘PupilPre_Cleanup.Rmd’
     ‘PupilPre_Interpolation_and_Filtering.Rmd’
     ‘PupilPre_Message_Alignment.Rmd’ ‘PupilPre_Plotting.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-patched-osx-x86_64