samc: Spatial Absorbing Markov Chains

An implementation of the framework described in "Toward a unified framework for connectivity that disentangles movement and mortality in space and time" by Fletcher et al. (2019) <doi:10.1111/ele.13333>. Incorporates both resistance and absorption with spatial absorbing Markov chains (SAMC) to provide several short-term and long-term predictions for metrics related to connectivity in landscapes.

Version: 1.0.4
Depends: R (≥ 3.3.0)
Imports: methods, gdistance, Matrix, raster
LinkingTo: Rcpp (≥ 1.0.1), RcppEigen (≥
Suggests: knitr, rmarkdown, testthat, ggplot2, png, viridis, gifski, gganimate
Published: 2020-01-08
Author: Andrew Marx ORCID iD [aut, cre, cph], Robert Fletcher ORCID iD [ctb], Miguel Acevedo ORCID iD [ctb], Jorge Sefair ORCID iD [ctb], Chao Wang ORCID iD [ctb]
Maintainer: Andrew Marx <andrewjmarx at>
License: GPL (≥ 3)
NeedsCompilation: yes
Materials: NEWS
CRAN checks: samc results


Reference manual: samc.pdf
Vignettes: Overview
Basic Tutorial
ggplot Visualization
Temporal Analysis
Package source: samc_1.0.4.tar.gz
Windows binaries: r-devel:, r-devel-gcc8:, r-release:, r-oldrel:
OS X binaries: r-release: samc_1.0.4.tgz, r-oldrel: samc_1.0.4.tgz
Old sources: samc archive


Please use the canonical form to link to this page.